Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi203g00092 ATGCCGATTCCAACGAAATCAACGAGGCCGGCTCAGGAAGGCGGCAGGGACTCCGACGAGTCTGCGGCGACTCCGTCGAACAACCTATGGGTCGGGAATCTGGCGACGGACGTTTCGGACTCCGATCTTATGGACCTGTTCGCTCAATACGGCGCCCTCGACAGCGTCACCTCCTATTCCGCTCGCAGTTACGCCTTCGTGTTCTTCAAGCGCGTCGAAGATGCCAAGGCTGCTAAGAACGCTCTCCAAGGCTTCTCTCTCCGTGGCAGTTCCTTGAAAATTGAGTTTGCCAGACCGGCAAAGCCATGTAAGCAACTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGAATTCAAGTTCTTCAGAGACCGAAATACTGCATGTGTTGAATTTATCAATCTGGACGATGCTGCTCAGGCAATGAAAATCATGAATGGGAAACGTATAGGTGGGGAGCATATTCGTGTTGACTTCCTCCGGTCACATTCTACAAAAAAAGATCAGTTGCTTGATTATGGGCAGTTTCAAGGTAAAAGCTTGGGGCCTACTGATTCCTATTCTGGACAGAAAAGACCATTGCATTCACAAACTTTGATGGGGAGAAAGGGCGATGGTCAACCCAGTAATATTTTATGGATTGGTTATCCTCCTGGTGTTCAAATTGATGAGCAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCATTTGTTGAATTTAGAAGTATTGATGAAGCTCGACGAGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGACCTGGTACCTGGCAAAGATTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGACGTATTCCTGAATGAGCATCCATTCCCACCATTACAAATGGATTTGTTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCATCTAGCGGTATTGTTAGCCCAAACACACCGATGCGGCCTTTTGGGCCTCAAGGTGGTCTTGAATCTGTTGTTTCTGGCCCTGAGTTTAATGAGATCAGCTCCACGGGTAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGTGTTAGGCTTCCTACAAGGTCAGCCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATCCTAAACGGTCAAGGATAGATGGTACTTTGCCTGTTGATCATGCTGCATTTCCTTTAAGGAACATAGATGAACGTGCGTTAGCTCTGGAACAAACATATGGGATTGATCCAGTTATTGATGGAGGTGTTTCTGGTCCATATGTAAACATTCAAGGAAAGAATCACCTTGGTCCAGCGAACACAAGGATTACAGCTGGAGTACATGGTTCTGTCCAAGCTGATGTTGATCATATATGGCGTGGAATTATTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTTCCTATTGGGAAAGGGATTGGGACTGAGCTTCCTGATGTTGTTGATTGTTCAGCTAGGACGGGATTGGATATACTCACGAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCTAAATTTGTTGATAACACCACCTTATTCTTGGTACCTCCTTCTGATTTTCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCCATGCAACAGTCATCACATTTGCCTATACCGACAACTCAGTATATGCAGCAGATTCCTCCTTCACAGGCTGAATATGGTATGATTCCTGCAAAGGAGGAACGGATTTCGCCAATGGATTACAACAGGTCATTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCAGCTACAGGTGGCCCCCCTTCAGTTCAGTCTGTGCCTCCAGATTATGCTCCTAATACTACTGCTTCTGGGTCCCAAGCTGGAATTGGATTAACACCTGAGCTTATTGCAACTTTAACTTCTTTACTACCTGCCACCGCACAATCATCTGCCACTGATGGTGCCAAATCAGCAGTAGGTTCCTCGACTGTAAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAGTCCATTCATCCTCCTCAACAGTTGAGGAATATGTATAACATTAACAATGCTCATTATCAGTCTTATCCACCAACATCAGCTCCTGGTCACACTGCTCAAGTGGTCTCTGGCAGTTCTCATATACAAGACCATGCTGTCAGCCTGCAGCAGCAAGGTGCTGTTTCATCTAGACACATGTCTAATTTCGTCATACCAACTCAAAGTGGACAGGTAGCTGGATCCCCCCATGTCAATCAGCAGTATCAGGTTGAAGTCTCACCTAGTACTCAGAAAAGTTTTGGAGTGGTGCAAGGAACTGATGCCTCTGTTTTATACAATTCTCAGGCTCTCCAGCAACTCAATAACAATTCTCAGCCTTTCCAGCAACCTAATAATTCTATTGCCTTATCTAATCAAGTTAACAGTGCTAATCCTTCACAGCAACAATCTGGCATGCCATATACACTGGACCACCAAATAAACCCAGACCCGCATAATCAGCAACTTCCTGTCTTTGGAGTAGGTCAAGGGACATCAGAAGTTGAGGCTGATAAGAATCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCTTCCAAATACAGCAGCAGCAGCAAACCCAAGGAGGACACGGGCCAGGAGTTCAACAATGA 2997 0.4488 MPIPTKSTRPAQEGGRDSDESAATPSNNLWVGNLATDVSDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFSLRGSSLKIEFARPAKPCKQLWVGGISPAVTKEDLEAEFRKFGKIEEFKFFRDRNTACVEFINLDDAAQAMKIMNGKRIGGEHIRVDFLRSHSTKKDQLLDYGQFQGKSLGPTDSYSGQKRPLHSQTLMGRKGDGQPSNILWIGYPPGVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGKDYPGFYPGSNGPRPDVFLNEHPFPPLQMDLFGHNRPMVPNNFPGQLPSSGIVSPNTPMRPFGPQGGLESVVSGPEFNEISSTGKMGPNWKRPSPPAPGMLSSPAPGVRLPTRSASGAWDVLDINHIPRDPKRSRIDGTLPVDHAAFPLRNIDERALALEQTYGIDPVIDGGVSGPYVNIQGKNHLGPANTRITAGVHGSVQADVDHIWRGIIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFPPVPSSAPMQQSSHLPIPTTQYMQQIPPSQAEYGMIPAKEERISPMDYNRSLHEDSKLPAKPVYPATGGPPSVQSVPPDYAPNTTASGSQAGIGLTPELIATLTSLLPATAQSSATDGAKSAVGSSTVKPPFPPVAPNDGNQSQLWKQDHQIADQSIHPPQQLRNMYNINNAHYQSYPPTSAPGHTAQVVSGSSHIQDHAVSLQQQGAVSSRHMSNFVIPTQSGQVAGSPHVNQQYQVEVSPSTQKSFGVVQGTDASVLYNSQALQQLNNNSQPFQQPNNSIALSNQVNSANPSQQQSGMPYTLDHQINPDPHNQQLPVFGVGQGTSEVEADKNQRYQSTLQFAANLLFQIQQQQQTQGGHGPGVQQ 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi203g00092 998 FunFam Flowering time control protein FPA 19 101 - -
Sebi203g00092 998 Gene3D - 213 301 IPR012677 -
Sebi203g00092 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Sebi203g00092 998 MobiDBLite consensus disorder prediction 748 781 - -
Sebi203g00092 998 MobiDBLite consensus disorder prediction 195 217 - -
Sebi203g00092 998 SUPERFAMILY RNA-binding domain, RBD 101 189 IPR035979 GO:0003676
Sebi203g00092 998 Gene3D - 4 102 IPR012677 -
Sebi203g00092 998 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 97 - -
Sebi203g00092 998 MobiDBLite consensus disorder prediction 686 720 - -
Sebi203g00092 998 CDD RRM_SF 29 95 - -
Sebi203g00092 998 FunFam flowering time control protein FPA 217 310 - -
Sebi203g00092 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723
Sebi203g00092 998 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Sebi203g00092 998 MobiDBLite consensus disorder prediction 803 824 - -
Sebi203g00092 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 169 IPR000504 GO:0003723
Sebi203g00092 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 92 IPR000504 GO:0003723
Sebi203g00092 998 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 290 IPR000504 GO:0003723
Sebi203g00092 998 MobiDBLite consensus disorder prediction 1 26 - -
Sebi203g00092 998 SUPERFAMILY RNA-binding domain, RBD 219 303 IPR035979 GO:0003676
Sebi203g00092 998 Gene3D - 103 183 IPR012677 -
Sebi203g00092 998 SMART rrm1_1 28 95 IPR000504 GO:0003723
Sebi203g00092 998 SMART rrm1_1 105 172 IPR000504 GO:0003723
Sebi203g00092 998 SMART rrm1_1 225 293 IPR000504 GO:0003723
Sebi203g00092 998 Pfam SPOC domain 506 624 IPR012921 -
Sebi203g00092 998 FunFam Flowering time control protein FPA isoform A 102 216 - -
Sebi203g00092 998 CDD RRM_SF 106 172 - -
Sebi203g00092 998 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Sebi203g00092 998 MobiDBLite consensus disorder prediction 195 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi203g00092 Sebi-Chr203 1420890 1429043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi203g00092 28 287 Eukaryotic Initiation Factors Gene Family AT2G23350 24.476 1.71e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi203g00092 - - gmx:100777570 1661.35