Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi203g00088 ATGTTGATGTTCAATTATCAGCTTTATCTATGTAAGTCCAGCATAACAATTGGGTCTCCAATCTCCATTGAAGCCTTTGTCCTGACTATTACCTCATATTTGTTTGAAAGGATTCAGCAGAGCCTTGCTCTATCTTCAGTCGTTAGCTGCCGTCGTGATTGCTGGCTGTTGCTTATTCTCAGTGCATCGAATGGCAATGGCGATGATGATGGCGGTGAAGAGGTTGTTTGGTTTGTAGTAGAACAGAGAACCCCATTTCTCATGGTTTCAGTCCTCAAATTTCGTACCATCTTCTACACACTAGAAGCCACAAGTCGACAAATATATGGTGCCCTTAGATATTTTCATTCTGGGTCTGAATGGGTTCACAAGGGTTTGGATAAAAATCTAAACTTGGCACCAAACGAAAAGCAAAAGAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAACTCAATCCCCCCTTATGAAGTTGCCAATAAACTGAGAATAGCTGCATCTTCCTTTGGGGTTGTTCGGTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCCCAAGTTGTTAAGGAGAGGAGGAAAGAGAGGGCACTGTTGAATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAGCCTTATCTTTGTAGGGTTTGTGGGAGAAAATTTTATACTAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCACATAAAAAGGATGAACCAGATAGAGTCAGCTAAAGGGAACAGGAAGGTGAAGTTGGTGGCTAAGTATTCCATGAAAATGGAAAAGTATAAGAAGGCTGCAAATGCTGTTCTGACTCCTAAAGTGGGGTATGGTTTGGCAGATGAACTAAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATCGTGCATTGCAAAATCACATGGTGGATATCATGGATCATAGGAGGGTTGAGTGTCTGGTACTTGTATCTGATGATTCTGATTTTGTTGATGTAATAAAGGAAGCAAAGCTACGGTGTCTCAAGACGGTTGTCATTGGTGATACTACTGATGATGGAGTCCTGAAGAGGACTGCTGATGCTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAGGCCAAAAAAGAGGCTGTATCAGTTGTGGAAAACTGGAAGGATCGTGATATCTTAAAAAGGTTAGAGTGGACATACAACCCAGAAGTAGATAAAAAGAAATTCAATCTGAATGATAAGGTTACTGAAACATCTGAAGATGAAGATATGGAAGATATCTGTGATGAAGTTGATGATGACTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTATGACAATGTCACAACTAGAGGCAAGTTATCCATTGTATCTGTGAGTAGGTGA 1416 0.416 MLMFNYQLYLCKSSITIGSPISIEAFVLTITSYLFERIQQSLALSSVVSCRRDCWLLLILSASNGNGDDDGGEEVVWFVVEQRTPFLMVSVLKFRTIFYTLEATSRQIYGALRYFHSGSEWVHKGLDKNLNLAPNEKQKRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQVVKERRKERALLNRLENKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHEREHIKRMNQIESAKGNRKVKLVAKYSMKMEKYKKAANAVLTPKVGYGLADELKRAGFWVQTVLDKPQAADRALQNHMVDIMDHRRVECLVLVSDDSDFVDVIKEAKLRCLKTVVIGDTTDDGVLKRTADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKFNLNDKVTETSEDEDMEDICDEVDDDYKDDRGSWWELDYDNVTTRGKLSIVSVSR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi203g00088 471 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 133 458 - -
Sebi203g00088 471 ProSitePatterns Zinc finger C2H2 type domain signature. 220 241 IPR013087 -
Sebi203g00088 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 246 IPR013087 -
Sebi203g00088 471 Pfam NYN domain 290 371 IPR021139 GO:0004540
Sebi203g00088 471 SUPERFAMILY beta-beta-alpha zinc fingers 214 244 IPR036236 -
Sebi203g00088 471 CDD PIN_LabA-like 228 359 - -
Sebi203g00088 471 Gene3D - 131 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi203g00088 Sebi-Chr203 1367337 1369692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi203g00088 135 457 C2H2 Transcription Factor Family AT4G12240 61.078 3.71e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi203g00088 NYN 6.8e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi203g00088 - - lja:Lj3g3v3326020.1 639.417