Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi203g00065 ATGGGTAACTCATTGCAATCACTACATAGACATCGGGAAGAGGATGAGGGCGTTAATGCCATTGAAGAACAGCTAATTAGAGAGGGAACGTGTGAAATCTGCATTGAACTCTTCACTCCAGAAACACTTTTTCAGAATAACAATCTATGTGTGCATCCTTTTTGTGTGGAATGCATAGCCACATATATAGAGACTAAAATAGGCGAGAATGTGGGGAAAATCCCATGCCCTGCCCTGGACTGCGAAAACCAACTGGATCCTGTGTTTTGTAGTTCAATCATCTCAAAACAGTTGTTTGATAAATGGTGCGATGCTCTTTGCAATTCAGCAGTTTTAGAGATCCAAAACCGAACATATTGCCCGAATCAACTTTGCTCTGCCTTGGTTATCAACGAATGTGATGACAAATCCGTGAAAGAAGTTATGTGTCCCAATTGCAAGCAGTATTTCTGCTTCAAGTGCCAAATTCCTTGGCATACAGGGTATAGATGCCATGAGGTTGGACAGTTCAGGGATAGGAATGATGTTCTGTTTGGGCAATTAGCAGAGAGAAGGAGATGGAGTAGATGTTATAGATGTGGTGAATGTCTTGAGCGTGCTGGAGGTTGCAGAGTGATTCATTGCAGGTTAGTTAACTAG 639 0.421 MGNSLQSLHRHREEDEGVNAIEEQLIREGTCEICIELFTPETLFQNNNLCVHPFCVECIATYIETKIGENVGKIPCPALDCENQLDPVFCSSIISKQLFDKWCDALCNSAVLEIQNRTYCPNQLCSALVINECDDKSVKEVMCPNCKQYFCFKCQIPWHTGYRCHEVGQFRDRNDVLFGQLAERRRWSRCYRCGECLERAGGCRVIHCRLVN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi203g00065 212 Pfam IBR domain, a half RING-finger domain 101 164 IPR002867 GO:0008270
Sebi203g00065 212 SUPERFAMILY RING/U-box 29 109 - -
Sebi203g00065 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Sebi203g00065 212 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 208 IPR031127 GO:0004842|GO:0016567
Sebi203g00065 212 SMART ibrneu5 100 164 IPR002867 GO:0008270
Sebi203g00065 212 ProSiteProfiles Zinc finger RING-type profile. 31 77 IPR001841 -
Sebi203g00065 212 FunFam RBR-type E3 ubiquitin transferase 26 113 - -
Sebi203g00065 212 SUPERFAMILY RING/U-box 100 167 - -
Sebi203g00065 212 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Sebi203g00065 212 ProSiteProfiles TRIAD supradomain profile. 27 212 IPR044066 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi203g00065 30 209 C3H Transcription Factor Family AT2G19610 25.131 1.84e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi203g00065 K11975 - rcu:8263174 241.506