Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi203g00055 ATGGATGAACAGCAATCCTTCTTCACTATCATCAGGGAAGGCTTGAACACCAAGCACATGAAAGTGCCACCAGAGTTTCATAAGTATTTGGATGAAGAGTTCATGATGATGTCTTGGAGGAAAGCAATTCTTTCATGCCCTTCTAATGAGCAGTGGGAAGTAACTGTTTTGAAGAAAGGAAATGACATTTATATAGAAGATGGTTGGGCAAAATTTCTGATGGACAACTTAGTGGCCATGGATGAGTTCTTGCTATTCACCTATAATGGAGAGAACCACTTCCAGGTGCAAATTTTTGGTAAGGATGGATGTGAGAGAGTAAACTTCAGACAACAAGCACAAAATGACACCCCCACCTCGGCGAGGAAAAAGAAAGATATGACTGATCCCAGCAACAATGGCTCACTTCCTAAGGCTTACTTCTCAAAGCCCCAGGTTTCACCTGAAATTGAAAAACTAGCTCAGTCTTTTACCTCTGACAATCCATATTTCACCCACTTCATGACAAAATCAAATGTGGAAAATCCGTTCGTAATGCCTGTTGCTACTAAGTTTGCGAGAAGGTATATTTCTGAAGCGGTAAAAACGATCATCCTTGAGAATTCGGAAGGAAAATATTGGGAAGTGGGAGTGGGTTGTATAGGTACTCCAAACAAAAGGTATTTTCAGTTTACAAGAGGATGGGAAAAATTTGTTCGTGGAAACAAGCTCAAGATAGGTGACCTTTGCATATTTGAACTTATAGGCGGAAACTATATCAGGGTTCACATTTTCAGATCATGTGCACCAAATTAA 795 0.4013 MDEQQSFFTIIREGLNTKHMKVPPEFHKYLDEEFMMMSWRKAILSCPSNEQWEVTVLKKGNDIYIEDGWAKFLMDNLVAMDEFLLFTYNGENHFQVQIFGKDGCERVNFRQQAQNDTPTSARKKKDMTDPSNNGSLPKAYFSKPQVSPEIEKLAQSFTSDNPYFTHFMTKSNVENPFVMPVATKFARRYISEAVKTIILENSEGKYWEVGVGCIGTPNKRYFQFTRGWEKFVRGNKLKIGDLCIFELIGGNYIRVHIFRSCAPN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi203g00055 264 SUPERFAMILY DNA-binding pseudobarrel domain 157 259 IPR015300 -
Sebi203g00055 264 Gene3D - 1 104 IPR015300 -
Sebi203g00055 264 Pfam B3 DNA binding domain 164 259 IPR003340 GO:0003677
Sebi203g00055 264 Pfam B3 DNA binding domain 16 101 IPR003340 GO:0003677
Sebi203g00055 264 MobiDBLite consensus disorder prediction 111 141 - -
Sebi203g00055 264 CDD B3_DNA 162 259 IPR003340 GO:0003677
Sebi203g00055 264 Gene3D - 145 261 IPR015300 -
Sebi203g00055 264 ProSiteProfiles B3 DNA-binding domain profile. 164 261 IPR003340 GO:0003677
Sebi203g00055 264 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 260 IPR044837 -
Sebi203g00055 264 SMART B3_2 7 102 IPR003340 GO:0003677
Sebi203g00055 264 SMART B3_2 164 261 IPR003340 GO:0003677
Sebi203g00055 264 ProSiteProfiles B3 DNA-binding domain profile. 5 102 IPR003340 GO:0003677
Sebi203g00055 264 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Sebi203g00055 264 CDD B3_DNA 6 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi203g00055 Sebi-Chr203 825098 826768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi203g00055 7 262 REM Transcription Factor Family AT4G31640 25.379 1.18e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi203g00055 B3 2.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi203g00055 - - aprc:113865156 254.988