Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi203g00053 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTACCCTCTACTCTCCAAGCCAAGCAACTGAGGCTTCCAGATAATTTTATGAGGAAATATGAGGGTGAGCTTTCTGCCATGGCTACCCTTTCTGTTCCTGATGGCAGTGTCTGGCGTGTAGGATTAAAGAAGGCAGACAACAAATTTTGGTTCCTTGATGGCTGGCAAGACTTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTGTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGGCTACATCTGAGATAAACTATATAACCACCACACAAAGCAGTAATGAAGGACCTTACTTTGGAAGTCGTCTTAAGATTTTTGAAGAAATGGAAGATGAAGATTCCATTGAAACCTTGGATTCGTCACCTTCCCACCTTACTCCTGGTACATTGCAAGACAAAGCTATTTCTGGATCAGTAGATAATTTGACACCTGGCAAGAATTGTTCGCCTCCAGCATCGCAGAATCTGTTTAATGGATCTAAACTTAATAACATAAACTGGGGAGAGGGTGGGAATGCCCTTTCTTCAAAAAGTGCCAATTCACTAGAAAATCAGCTGACCAAAAATATAGGTGTCCAATTTAATGCAGCTGAGTATAAAAGATCTACTGAAGAATTGAAATTGCGTGCATCTATGGAGGAAAAGGCTAAAAAAGCTGCGATAAAGAAGCGGAAATCAGATGACCAGGAAGCTTCTGCTGAAAATGAAGAAGAGGTGGAAATGCGCTATAGATTTTATGAAAGTGCATCTGCAAGAAAAAGAACTGTGACAGAGGAAGAAAGAGAAAAGGCCGTCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCATCCTATTTATACAGAGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGATTTATTAAACTTCAAATCTCTGATGGGAGAGAGTGGCCTGTTCGCTGCCTTTATAGAGGAGGTAGAGCTAAGTTAAGCCAGGGTTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAAAGTGAAAGATGTAGTGCTGCAAGTTACTATTTTTCGTGTCACTGAGGATGTGGGATTGTCGAGCCCTCCTTCACAGAAGAACCAAAATGTGAGCTCAGCAAAAATGTCAAACACTCCCTTGCAGCATGACCATACTTCAACTTAA 1275 0.4118 MPRPSFHKLVLPSTLQAKQLRLPDNFMRKYEGELSAMATLSVPDGSVWRVGLKKADNKFWFLDGWQDFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATSEINYITTTQSSNEGPYFGSRLKIFEEMEDEDSIETLDSSPSHLTPGTLQDKAISGSVDNLTPGKNCSPPASQNLFNGSKLNNINWGEGGNALSSKSANSLENQLTKNIGVQFNAAEYKRSTEELKLRASMEEKAKKAAIKKRKSDDQEASAENEEEVEMRYRFYESASARKRTVTEEEREKAVNAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGREWPVRCLYRGGRAKLSQGWFEFALENNLGEGDVCVFELLKVKDVVLQVTIFRVTEDVGLSSPPSQKNQNVSSAKMSNTPLQHDHTST 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi203g00053 424 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Sebi203g00053 424 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Sebi203g00053 424 Gene3D - 1 98 IPR015300 -
Sebi203g00053 424 SMART B3_2 296 391 IPR003340 GO:0003677
Sebi203g00053 424 SMART B3_2 6 98 IPR003340 GO:0003677
Sebi203g00053 424 MobiDBLite consensus disorder prediction 137 173 - -
Sebi203g00053 424 Pfam B3 DNA binding domain 299 390 IPR003340 GO:0003677
Sebi203g00053 424 Pfam B3 DNA binding domain 9 95 IPR003340 GO:0003677
Sebi203g00053 424 CDD B3_DNA 294 389 IPR003340 GO:0003677
Sebi203g00053 424 MobiDBLite consensus disorder prediction 134 173 - -
Sebi203g00053 424 CDD B3_DNA 4 96 IPR003340 GO:0003677
Sebi203g00053 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Sebi203g00053 424 Gene3D - 273 394 IPR015300 -
Sebi203g00053 424 MobiDBLite consensus disorder prediction 395 424 - -
Sebi203g00053 424 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Sebi203g00053 424 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi203g00053 Sebi-Chr203 802689 805808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi203g00053 1 395 B3 DNA Binding Superfamily AT3G18990 51.000 1.09e-131 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi203g00053 B3 4.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi203g00053 - - gmx:100813285 666.381