Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi203g00023 | ATGGACGATTACGTGAGCAGCGACGACGATTACCGTTACTCTGATCAGGAGGACTCCGTCGACGACGCTTTCGAAAACGAGGACCACGATTATCAGTTGCTCTCTTCCAAGGGCCCCACTACTCAGGTGATAACGAAGGAATCACTGCTAGCTGCACAGAGGGAGGATTTGCGCAGAGTGATGGACATGCTATCTTTAAAAGAGCAACATGCACGAACTCTGCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGATAGGGGGAAAGCATTTCTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCATGAGTCTGACTCATCTGTTCGCGGTTCAGTAATGTGTGAAATATGCATAGAGGACGTTCCTACTAATGAATCGACAAGAATGGACTGTGGTCATGGCTTCTGCAACTCCTGTTGGACAGAGCATTTTATAGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCATACAAATGTAATTCCATTTGTGATGAAGCTGTAGTAAGATCTCTACTCAATATAAAGCACTCTGACATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGTGTTGAGGAAGATGACTTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGCTTTAATTGCTTGTCAGAAGCGCACTCCCCTTGTTCATGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAGACTGTTAATTGGATAACTGTTCATACAAAACCTTGTCCGAAGTGCCATAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGACAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGAGCACACTTGGTCAAGTATAGCTGGTCATAGTTGTGGTCGCTACAAAGACCAAGAAAAAACAGCTGAACGGGCAAAGAGGGATCTATATAGGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAGGAGGCCATACAAGGGAAGATTGCTATTTCAGAAGAAAAGGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAATCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTAATGATGATAAGGTCATGGAGATAAGGATGAGGATAATCAATCTGTCATCAATTATTGACAAACTTTGTCAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATGCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTTTCAGTTTGTTGGAGTAATAAAGCCAATAAAACTGGTGTAACGGAAGAACTTGATCGGCCTTCTGGATCAGGGAGTTCAGATGATAGTGGATGTTCTTCTCGAAAGCGTGCTAGGAAAGAGGGTCTTGGAAGTGGCTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA | 1743 | 0.4137 | MDDYVSSDDDYRYSDQEDSVDDAFENEDHDYQLLSSKGPTTQVITKESLLAAQREDLRRVMDMLSLKEQHARTLLIYHRWDVEKLFAVYVDRGKAFLFAEAGVSVDEHHESDSSVRGSVMCEICIEDVPTNESTRMDCGHGFCNSCWTEHFIVKINEGQSKRIRCMAYKCNSICDEAVVRSLLNIKHSDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEEDDLCEVECSCGLQFCFNCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKDQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKEAIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVENLSKILEEPFETFNDDKVMEIRMRIINLSSIIDKLCQKMYECIENDLLGSLHLGMHSIAPYKSKGIERASELSVCWSNKANKTGVTEELDRPSGSGSSDDSGCSSRKRARKEGLGSGFFDLNLPAEFVDRN | 580 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi203g00023 | 580 | MobiDBLite | consensus disorder prediction | 534 | 559 | - | - | |
| Sebi203g00023 | 580 | ProSiteProfiles | Zinc finger RING-type profile. | 121 | 169 | IPR001841 | - | |
| Sebi203g00023 | 580 | SUPERFAMILY | RING/U-box | 262 | 319 | - | - | |
| Sebi203g00023 | 580 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 48 | 397 | IPR031127 | GO:0004842|GO:0016567 | |
| Sebi203g00023 | 580 | CDD | RING-HC_RBR_TRIAD1 | 119 | 172 | - | - | |
| Sebi203g00023 | 580 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 207 | IPR013083 | - | |
| Sebi203g00023 | 580 | ProSiteProfiles | TRIAD supradomain profile. | 117 | 331 | IPR044066 | - | |
| Sebi203g00023 | 580 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Sebi203g00023 | 580 | FunFam | RBR-type E3 ubiquitin transferase | 250 | 497 | - | - | |
| Sebi203g00023 | 580 | Pfam | IBR domain, a half RING-finger domain | 192 | 254 | IPR002867 | GO:0008270 | |
| Sebi203g00023 | 580 | Coils | Coil | 434 | 454 | - | - | |
| Sebi203g00023 | 580 | SUPERFAMILY | RING/U-box | 118 | 204 | - | - | |
| Sebi203g00023 | 580 | Gene3D | - | 250 | 497 | - | - | |
| Sebi203g00023 | 580 | CDD | Rcat_RBR_ARI1-like | 275 | 328 | - | - | |
| Sebi203g00023 | 580 | SUPERFAMILY | RING/U-box | 192 | 260 | - | - | |
| Sebi203g00023 | 580 | FunFam | RBR-type E3 ubiquitin transferase | 115 | 206 | - | - | |
| Sebi203g00023 | 580 | CDD | BRcat_RBR_ANKIB1 | 199 | 263 | - | - | |
| Sebi203g00023 | 580 | MobiDBLite | consensus disorder prediction | 534 | 551 | - | - | |
| Sebi203g00023 | 580 | Pfam | Ariadne domain | 331 | 580 | IPR045840 | - | |
| Sebi203g00023 | 580 | SMART | ibrneu5 | 192 | 254 | IPR002867 | GO:0008270 | |
| Sebi203g00023 | 580 | SMART | ibrneu5 | 262 | 327 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi203g00023 | Sebi-Chr203 | 334753 | 338578 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi203g00023 | 61 | 555 | ARIADNE family | AT2G16090 | 69.940 | 0.0 | 720 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi203g00023 | K11968 | - | gmx:100783343 | 1043.49 |