Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi202g00049 ATGGCGAACCCAACCAAGAAGAGCAGGGGTCGTCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGCAATGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTATGTGGTGCTAATGTTGCTCTCATTGTCTTCTCACCTGGTCTGAAGGTCTTCTCCTTTGGCCACCCCAATGTCGATGCGGTTATCAATCGCTATCTGAAGCGGGTCCCACCACAAAACTCGGGCACCATGCAGTTCATTGAGGCTCACCGCAACGCCAACGTGCATGAGATGAACGCGCAATTGGCTCAGATCAATAACCAACTTGAGAATGAGAGGAAGCATGGTGAAGAGTTGAACCGTATGCAGAAAGCAGCACAAGCTCAGTTCTTGTGGGCTTATCCCGTTGAGGAGATGAATAGAGTTCATCTTGAACAATTCAAGTTTGCCTTAGAAGAGCTTAAAAAACATGTTACTCACTATTGTGATAGGCTCCTCATTCAAGGTGCTACTTCTGTTGCTGCTGCCACCAACCCAACTGATCGTCATCATCATATTTTTACTATTGCACCACCTGTTGGCTCCTCTTCCAACCTCCCTCTCCTTCAGACACCCCCTCCACCTCAGGTGTTTCCACCGCAGTTCCTTCAGAACCCTATGCTGCAGAATCATTTGTTTGATCATGGGAGCTTGATGCGCCACCATGGATTTAACAACTTAGGAGGGTATGGAAATCCTAGATTCTTCTGA 765 0.4771 MANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRNGLFKKASELCTLCGANVALIVFSPGLKVFSFGHPNVDAVINRYLKRVPPQNSGTMQFIEAHRNANVHEMNAQLAQINNQLENERKHGEELNRMQKAAQAQFLWAYPVEEMNRVHLEQFKFALEELKKHVTHYCDRLLIQGATSVAAATNPTDRHHHIFTIAPPVGSSSNLPLLQTPPPPQVFPPQFLQNPMLQNHLFDHGSLMRHHGFNNLGGYGNPRFF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi202g00049 254 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Sebi202g00049 254 Gene3D - 89 177 - -
Sebi202g00049 254 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Sebi202g00049 254 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Sebi202g00049 254 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Sebi202g00049 254 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Sebi202g00049 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Sebi202g00049 254 Coils Coil 97 127 - -
Sebi202g00049 254 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Sebi202g00049 254 PANTHER MADS BOX PROTEIN 11 164 - -
Sebi202g00049 254 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Sebi202g00049 254 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Sebi202g00049 254 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi202g00049 Sebi-Chr202 1239330 1240094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi202g00049 5 189 Type I MADS-box Gene Family AT5G60440 52.821 4.13e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi202g00049 SRF-TF 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi202g00049 - - gmx:100794751 294.278