Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi202g00038 ATGGGCATTGCAGGTGGTATCGAGCATGGACAAAATTCATATTGGTATGGGCAGTGTACTCATCCTTCTTCACCCCAATGGAGTTTGCATTTTTTCGTGGCCTGCCAGAGAATCTCTTTGTACTGGATATCATTGGACAAAGACAGTCAAACCTATCGTATGGTCTACAAGCGAACTCCAATTGCTCTGCGGTATCTAAAATCTAGCTTTATCTTTGACTTTCTTGCATGTATGCCCTGGGACATCATCTACAAGGCTTGTGGACGAAAAGAGGCAGTGCGGTATCTTTTGTGGATTAGATTATATCGGGCGCGGAGAGTCGCAGATTTCTTCCAGAGGTTGGAGAAGGACATACGTGTCAATTACATTGTTACCCGGATTGTGAAACTCATAGTAGTTGAACTCTACTGCACACACACAGCAGCCTGCATTTTCTACTATCTGGCTACTACACTACCTGAATCACAAGAGGGGTACACATGGATAGGAAGTTTAAAACTGGGTGACTTCAGTTATTCACATTTCAGAGAAATTGATCTATGGAAGCGCTACACAACATCTTTGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATATATGTTTCGTTTGACATGGTTCTCGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTAAAGGGATCAAAGACTGAAAAGTTCAGGGACAAGATGACAGATCTTATGAAATATATGAACAGAAATAGACTTGGAAGGGATATCCGTGAACAAATAAAAGGCCATGTGCGCTTACAGTTTGAGAGCAGCTACACTGACGCTGCTCTCATCCAGGACATTCCCATTTCTATTCGATCTAAGATATCCCAAACATTGTATTTGCCATACATTGAAAAGGTTTCTCTGTTTAAAGGCTGCTCTTCAGAATTCATCAATCAGATTGTTATTAAGCTCCATGAGGAATTCTTTCTTCCAGGGGAAGTTGTAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTGTTTCACTTCTACAGCCTAACAGTACATTTGGAGAAATATCCATTCTTTGCAACATTCCTCAGCCATATACTGTTCGTGTCTGTGAACTGTGCAGGGTCCTGCGGCTTGATAAACAATCATTTACAAATATCCTAGAAATATACTTCTATGATGGAAAGAAAGTATTAGACAACCTTCTAGAGGGAAAAGAGTCTCTTCGAGGTAAGCAATTGGAGTCAGACATCAACTTTCATATTGGAAAGCTAGAAGCTGAACTTGCTTTGAAGGTCAACAGAGCAGCCTTTGATGGGGATCTATATCAGCTTAAAGGTTTGATTCGAGCTGGAGCTGATGCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCGGCGTCAAGAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAGACGTCAACATCAAAGATAACTTTGGGAACACACCTTTACTTGAAGCAGTTAAGAATGGACATGATCGTGTTGCTTCTTTACTTGTTAAAGAAGGGGCTACTATGAGGATAGAAAATGCTGGTAGTTTATTATGTACAGCAGTTGCAAGGGGAGATTCGGATTATCTCAATAGGCTTTTATCTAATGGAATGGATCCAAATTTGAAAGATTATGATTACCGTACCCCTCTTCATGTTGCTGCAGCTGAAGGTTTACACTTCATGACTAAGTTGTTATTAGATGCTGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAACACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGGTGCAAAATCTGCTCAATTGTCAGAATTCCCATGTCCTTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACGGTGTTCCCTTTCCACCCGTGGGATCCAAAAGAACAAAGAAGAAATGGAATTGTATTATGGGTTCCACAAACCATTGAAGAGCTAATTAAAGCAGCAGCAGAGCAAATAGGATTTTCTAGGGATTGTTGTATTTTATCCGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATAATCAGAAACTGTATTTAGTCCATGAAAAACATTAA 2214 0.4006 MGIAGGIEHGQNSYWYGQCTHPSSPQWSLHFFVACQRISLYWISLDKDSQTYRMVYKRTPIALRYLKSSFIFDFLACMPWDIIYKACGRKEAVRYLLWIRLYRARRVADFFQRLEKDIRVNYIVTRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQFESSYTDAALIQDIPISIRSKISQTLYLPYIEKVSLFKGCSSEFINQIVIKLHEEFFLPGEVVMEQGNVVDQLYFVCHGVLEEVGIAEDGSEETVSLLQPNSTFGEISILCNIPQPYTVRVCELCRVLRLDKQSFTNILEIYFYDGKKVLDNLLEGKESLRGKQLESDINFHIGKLEAELALKVNRAAFDGDLYQLKGLIRAGADANKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIKDNFGNTPLLEAVKNGHDRVASLLVKEGATMRIENAGSLLCTAVARGDSDYLNRLLSNGMDPNLKDYDYRTPLHVAAAEGLHFMTKLLLDAGASVFTKDRWGNTPLDEARMCGNKNLIKLLEGAKSAQLSEFPCPSQEFTDKMHPKKCTVFPFHPWDPKEQRRNGIVLWVPQTIEELIKAAAEQIGFSRDCCILSEDAGKITDVDMIKDNQKLYLVHEKH 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat profile. 521 553 IPR002110 GO:0005515
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
Sebi202g00038 737 Gene3D Jelly Rolls 298 430 IPR014710 -
Sebi202g00038 737 Pfam Ankyrin repeats (3 copies) 463 549 IPR002110 GO:0005515
Sebi202g00038 737 Pfam Ankyrin repeats (3 copies) 558 638 IPR002110 GO:0005515
Sebi202g00038 737 Gene3D - 17 238 - -
Sebi202g00038 737 PRINTS Ankyrin repeat signature 489 504 IPR002110 GO:0005515
Sebi202g00038 737 PRINTS Ankyrin repeat signature 601 615 IPR002110 GO:0005515
Sebi202g00038 737 Gene3D - 554 648 IPR036770 -
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat region circular profile. 521 552 - -
Sebi202g00038 737 SUPERFAMILY Ankyrin repeat 461 639 IPR036770 -
Sebi202g00038 737 SMART ANK_2a 488 517 IPR002110 GO:0005515
Sebi202g00038 737 SMART ANK_2a 552 581 IPR002110 GO:0005515
Sebi202g00038 737 SMART ANK_2a 521 550 IPR002110 GO:0005515
Sebi202g00038 737 SMART ANK_2a 618 648 IPR002110 GO:0005515
Sebi202g00038 737 SMART ANK_2a 585 614 IPR002110 GO:0005515
Sebi202g00038 737 CDD CAP_ED 312 418 IPR000595 -
Sebi202g00038 737 Pfam Cyclic nucleotide-binding domain 332 416 IPR000595 -
Sebi202g00038 737 Pfam Ion transport protein 60 237 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi202g00038 737 Gene3D Helix hairpin bin 240 297 - -
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat profile. 488 520 IPR002110 GO:0005515
Sebi202g00038 737 PRINTS EAG/ELK/ERG potassium channel family signature 136 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi202g00038 737 PRINTS EAG/ELK/ERG potassium channel family signature 184 201 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi202g00038 737 PRINTS EAG/ELK/ERG potassium channel family signature 228 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi202g00038 737 ProSiteProfiles KHA domain profile. 664 737 IPR021789 -
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat region circular profile. 585 617 - -
Sebi202g00038 737 Gene3D - 446 553 IPR036770 -
Sebi202g00038 737 ProSiteProfiles cAMP/cGMP binding motif profile. 312 415 IPR000595 -
Sebi202g00038 737 Pfam KHA, dimerisation domain of potassium ion channel 663 732 IPR021789 -
Sebi202g00038 737 SMART cnmp_10 312 430 IPR000595 -
Sebi202g00038 737 FunFam Gated outwardly-rectifying K+ channel 527 653 - -
Sebi202g00038 737 PANTHER POTASSIUM CHANNEL AKT1 48 734 IPR045319 GO:0005249|GO:0006813
Sebi202g00038 737 ProSiteProfiles Ankyrin repeat region circular profile. 488 520 - -
Sebi202g00038 737 SUPERFAMILY Voltage-gated potassium channels 52 237 - -
Sebi202g00038 737 SUPERFAMILY cAMP-binding domain-like 240 429 IPR018490 -
Sebi202g00038 737 FunFam Potassium channel KAT2 300 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi202g00038 Sebi-Chr202 741105 746958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi202g00038 559 641 Ion Channels AT5G37500 35.514 1.06e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi202g00038 K21867 - gmx:100814385 1272.69