Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi202g00030 ATGGTGTTGTCATGGACAAGAGGGAGAGTTTTTCGCCGTGCCCGCAAAGGGAAAGAGCTGAATAATTGTGGTGATTTGGAGGTGGAAATTGCTATTCCCACCCATTTTCGTTGCCCTGTGAGTTTAGACTTGATGAAGGACCCTGTCACACTTTCCACAGGGATCACCTACGACAGGGACAGCATCGAGAAATGGGTTGAAGCAGGGAACCACACATGCCCTGTTACCAAAAGGGAGTTAACAACTTTTGACATGATCCCAAATCACGCAATTCGAAGGATGATTCAAGATTGGTGCGTTGAGAATCGTTCTTTTGGGATTGAAAGGATCCCAACTCCTCGTATTCCTGTTACCCCTTACGAGGTTTCAGACACATGTTCCAGGATCCTCTCTGCTTCACAAAATGGGGATGACCAAAAAGTTCTTGAATTGGTGAGAAAAATCAAATCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTTTCCAATGGTTCTGCTCCTCTTGTTCTAGCTAGTGCTTTTGATTCTTTCTCACGTGGGTCTGTTGAGAAAAACGTGGTTGTTTTGGAGGAGATCTTAGGGGTTTTGACTTGGATGCGTCCTATTGTTGAAGAGGGTAGATCTGTTTTAGGGTCTTTGCCTTCTTTGAATTGCATGGTTTGGTTCTTAAATGATAAACAACTTTCCACAAGACAGAATGCAGCTTTGTTGCTCAAGGAAATGTCTGTTGAGGCATTGGCTAAAACTGAAGGGATTGTTGAGTCTTTGGTTAAGATGATTAGGGAGCCTATTGGGCCTGCTGCTACCAAAGCATGTTTGTCAACAATTTTTCACTTGGTTTCCTCATCAGAGAACAAAAGGGTAATTTCAGTGAGATTTGTGGAATTGGGTTTGGTTTCACTCTTGTTGGAGACCCTTGTTGATGCTGAAAGAGGGATCTGTGAGAAGGCTTTAGGGGTGTTGAATTCAATTTGTGATTGCAAAGAAGGAAAAGATGCAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAATTGAGTTCTAGTTTTGCAGTTTCTATTCTTTGGAAGCTTTGTGATAAGGCTGAGGAAGGGGTGTTAATTGAGGCACTTCAAGTTGGGGTGTTTCAGAAACTCCTTGTTCTTCTTCAAGTGGGGTGTGGGGAGAGTACAAAGGAAAAGGCTACTGAGTTGTTGAGATTATTGAATGGTTATAGGAGCAAAGCAGAGTGTGTTGATTCATCATTGGATTTCAAGCACCTTAAGAAGCCCTTCTAA 1308 0.4281 MVLSWTRGRVFRRARKGKELNNCGDLEVEIAIPTHFRCPVSLDLMKDPVTLSTGITYDRDSIEKWVEAGNHTCPVTKRELTTFDMIPNHAIRRMIQDWCVENRSFGIERIPTPRIPVTPYEVSDTCSRILSASQNGDDQKVLELVRKIKSWGKESERNKRCIVSNGSAPLVLASAFDSFSRGSVEKNVVVLEEILGVLTWMRPIVEEGRSVLGSLPSLNCMVWFLNDKQLSTRQNAALLLKEMSVEALAKTEGIVESLVKMIREPIGPAATKACLSTIFHLVSSSENKRVISVRFVELGLVSLLLETLVDAERGICEKALGVLNSICDCKEGKDAAKSNALTLPLVIKKLLRVSELSSSFAVSILWKLCDKAEEGVLIEALQVGVFQKLLVLLQVGCGESTKEKATELLRLLNGYRSKAECVDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi202g00030 435 SUPERFAMILY ARM repeat 129 410 IPR016024 -
Sebi202g00030 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 105 IPR013083 -
Sebi202g00030 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Sebi202g00030 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Sebi202g00030 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Sebi202g00030 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Sebi202g00030 435 Gene3D - 121 420 IPR011989 -
Sebi202g00030 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Sebi202g00030 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Sebi202g00030 435 SUPERFAMILY RING/U-box 28 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi202g00030 Sebi-Chr202 489815 491122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi202g00030 27 435 U-box Gene Family AT5G37490 47.596 2.04e-125 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi202g00030 - - gmx:100795913 668.692