Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi202g00028 ATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTATGAGCATAAGATATGGAGAATTAAAGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACAGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACAGAATTTTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACCGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTCGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTCCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTGATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATTTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1578 0.3644 MASRYDLICNVNGGYEHKIWRIKGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIADLKEVTQNFVFVTIGTVKDIESEYNRCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPPYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPDVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTASNMDSSVIKVLDVDFAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEEKN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi202g00028 525 Pfam Replication factor-A C terminal domain 264 382 IPR013955 -
Sebi202g00028 525 SUPERFAMILY Nucleic acid-binding proteins 24 86 IPR012340 -
Sebi202g00028 525 Pfam Domain of unknown function DUF223 23 107 IPR003871 -
Sebi202g00028 525 Gene3D - 87 228 IPR012340 -
Sebi202g00028 525 SUPERFAMILY Nucleic acid-binding proteins 93 219 IPR012340 -
Sebi202g00028 525 CDD RPA1_DBD_B_like 113 218 - -
Sebi202g00028 525 Gene3D - 243 408 IPR012340 -
Sebi202g00028 525 CDD RPA1_DBD_A_like 23 80 - -
Sebi202g00028 525 SUPERFAMILY Nucleic acid-binding proteins 250 387 IPR012340 -
Sebi202g00028 525 Gene3D - 22 86 IPR012340 -
Sebi202g00028 525 PANTHER OS03G0429900 PROTEIN 148 398 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi202g00028 Sebi-Chr202 467092 469669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi202g00028 24 347 Core DNA Replication Machinery Family AT2G06510 24.496 4.12e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi202g00028 - - adu:107477146 411.764