Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi202g00023 ATGGCGAACCCAACCAAGAAGAGCAGGGGTCGTCAAAAGATCGAGATGAAGAAGATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGAAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCTTATGTGGTGCTAATGTTGCTCTCATTGTGTTCTCACCTGGTGAGAAGGTCTTCTCCTTTGGTCACCCCAACGTCGATGCGGTTATCAATCGCTATCTGACGCGGGTCCCACCGCAAAACTCTGGCACCATGCAGTTCATTGAGGCTCACCGCAGTGCCAATGTGTGTGAGTTGAACGCACAACTGGCTCGGATCAATAGCCAACTTGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGAAAAGCAACGCAAGCTCAGTTCTGGTGGGCTTATCCCATTGAGGAGATGAATAAAGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAGCTTAAGAAACATGTTACTGACTATTGTGATAGGCTCCTCATTCAAGGTGCTGCTTCTGCTGCTACCACCAACCCAACTCATCATTATCCTATTTTTAATGTTGCACCACCTGCTGGCTCCTCTTCCAACCACCCTCTCCTTCAGCCACCTCCTCCACCTCAGGTGTTTCCACCACAGTTCTTTCAGAACCCTATGTTGCAGAATCATTTGTTTGATCATGGAAGCTTGATGCACCACCATGGATTTAACAACTTGGGAGGGTATGGAACTCCTAGATTCTTCTGA 759 0.4809 MANPTKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGANVALIVFSPGEKVFSFGHPNVDAVINRYLTRVPPQNSGTMQFIEAHRSANVCELNAQLARINSQLESERKHGDELNRMRKATQAQFWWAYPIEEMNKVQLEQFKLALEELKKHVTDYCDRLLIQGAASAATTNPTHHYPIFNVAPPAGSSSNHPLLQPPPPPQVFPPQFFQNPMLQNHLFDHGSLMHHHGFNNLGGYGTPRFF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi202g00023 252 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Sebi202g00023 252 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Sebi202g00023 252 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Sebi202g00023 252 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Sebi202g00023 252 PANTHER MADS BOX PROTEIN 11 164 - -
Sebi202g00023 252 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Sebi202g00023 252 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Sebi202g00023 252 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Sebi202g00023 252 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Sebi202g00023 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Sebi202g00023 252 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Sebi202g00023 252 Gene3D - 89 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi202g00023 Sebi-Chr202 372704 373462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi202g00023 5 171 Type I MADS-box Gene Family AT5G60440 60.000 5.18e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi202g00023 SRF-TF 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi202g00023 - - gmx:100780445 288.115