Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi202g00022 ATGAAACCAAACATTGATCTTGAAGTAGAAGCCTGTGTAGAATATGAATCTGATGTTACCAGCCAAGTTGCTTCCAATATATCTATTCAAGAAACCTCTGCAGGTCCTTGTAGTGACACCCTCACTAACTCTTCCAACATCACAAATCCATCAGGGATTAATCCTAATTCAGATGATATTTCACTTGACTTAACTCTCAACCTCAACAACAATGAGTTAGGTGCAAGAGACTCAATAGGATTCTCATTCTCAAGCACTTGTGAGAGCAGCAATGAACCTGCCTCTCAAACTACAGCAGCAACCATTCCAAGAGTTTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAGAATGCACACAAGAAAGAAAGAACACTAGCAAAAAGGGCTATGAGAATGGGGTTTTTTACTGAAAGGTATGCAAGTCTAGCATCTCTCCCTTTACATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCACTCCACCATGGTTTTTCACCAACAATGAGGCCTCCTGAGGTGAAAAGCAATGCAAGATTTGAGCAAGGATATCTTGGTCTTCCAATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCTGGAAGTTTTCGTCAGGTTGGAGAGGCAGATGATAGCCATCAGAATTTCATACTGAGTGGAAGTTCAGATTTGAGTTTTACTGAGGTGAATCCACCTGTAGAGATAGAGAACTCAACACCAGATTTGACACTGAAACTTTGA 774 0.4147 MKPNIDLEVEACVEYESDVTSQVASNISIQETSAGPCSDTLTNSSNITNPSGINPNSDDISLDLTLNLNNNELGARDSIGFSFSSTCESSNEPASQTTAATIPRVFSCNYCQRKFFSSQALGGHQNAHKKERTLAKRAMRMGFFTERYASLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEVKSNARFEQGYLGLPIFLEDDESDLLWPGSFRQVGEADDSHQNFILSGSSDLSFTEVNPPVEIENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi202g00022 257 FunFam Zinc finger protein 2 83 152 - -
Sebi202g00022 257 MobiDBLite consensus disorder prediction 35 54 - -
Sebi202g00022 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 56 183 IPR044246 GO:0009788
Sebi202g00022 257 Gene3D Classic Zinc Finger 84 150 - -
Sebi202g00022 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Sebi202g00022 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Sebi202g00022 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi202g00022 Sebi-Chr202 326101 326874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi202g00022 88 257 C2H2 Transcription Factor Family AT1G66140 51.020 5.08e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi202g00022 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi202g00022 - - gmx:100794851 447.973