Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00060 ATGGATTATGCAATAATAGAAAATTTTCTTATGGAAGAAATAGAGGTACAACCACACCGAGGAAGGCGTTACCAAGGGGAGGAGCAATGCAATGGAGATTCCAAGCCCGAGCTCAAGCCAAAGGATAAGGATAAGGAAGATGATGATTCTCATGCTTTTACAATGAAGGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGATGATGCATGACCATCAGAAGAAAGATAAAAAGCCTCTCATCCTTGATCCAAAAACTACACTGTATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAAAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTAGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGTACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAATTTGACTCATGTGATGATGAAGTGAGGATGCAGGGTTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGA 966 0.3799 MDYAIIENFLMEEIEVQPHRGRRYQGEEQCNGDSKPELKPKDKDKEDDDSHAFTMKASHYEPLSIENDNVWSLIPELSKMMHDHQKKDKKPLILDPKTTLYTWYKEFSKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTRILILDEGHNPRSTKSRLRKELMKVETKLRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKFDSCDDEVRMQGFEHVEENHKWFYRCL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00060 321 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 88 305 IPR044567 GO:0080188
Sebi201g00060 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 253 IPR027417 -
Sebi201g00060 321 MobiDBLite consensus disorder prediction 20 50 - -
Sebi201g00060 321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 251 IPR014001 -
Sebi201g00060 321 Gene3D - 69 289 IPR038718 -
Sebi201g00060 321 Pfam SNF2-related domain 88 263 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00060 Sebi-Chr201 1438834 1440322 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi201g00060 SNF2_N 1.2e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00060 K10875 - qsa:O6P43_013801 327.02