Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00058 ATGGATGATGATTCAAATGCTTTAGCTCCAACTGAGGTACAACCACGCCGAGGAAGGCGTTACCAAGGGGAGGAGCAATGCAATGGATATTCCAAGCCCGAGCTCAAGCCAAAGGATAAGGATAAGGAAGATGATGATTCTCATGCTTTTACAATGAAGGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTCATGGAAGAAAAATGTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTTGCTACTTAAACCTATTCCCAGATAAAAAGCCTCTCATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTAGTCATGGAGTCTACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAAAACAAGAAGTATATGGCTAAAGCTTTGAGACAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTAAGGAAAGAGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAAGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATGATGAACTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGGTTATGAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCATTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCAATGGTTGATCAAAACAACAACAAGTTCGAATAAGTTTTACACTTCACAGAAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAATGATAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAAGCTATTGCAAGGGCTTTCGTCCTGGCCAGGAAAGGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGCTAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGAGGATTTTTCGGAGAACCATTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 1935 0.3886 MDDDSNALAPTEVQPRRGRRYQGEEQCNGYSKPELKPKDKDKEDDDSHAFTMKASHYEPLSIENDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEEKCERRGGCVISHTPGAGKTFLVIAFLVCYLNLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKWHLHPSVLVMESTSFLSLTRENSKYENKKYMAKALRQSTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRAKKFFLDDIANKIDSCDDELRMQGLNMLRKITSGFIDGYESGNSEKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFHLEGELMVTLGSIHQWLIKTTTSSNKFYTSQKLNQLEKFKSDFRVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKNDREILLLYGEQDLFERGKVIDNFEDPCGVSKSYCSFSVDIFGLGVESIEDKASYCKGFRPGQERMVYVYQLLAKGSMEEAKYRRTTWKEWVSNMIFSEDFSENHSQWKAEKIEDDILREMVENDNPKAIHMIMKNEKASTN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00058 644 Gene3D - 557 640 IPR027417 -
Sebi201g00058 644 MobiDBLite consensus disorder prediction 1 47 - -
Sebi201g00058 644 MobiDBLite consensus disorder prediction 31 47 - -
Sebi201g00058 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 304 IPR027417 -
Sebi201g00058 644 Gene3D - 47 340 IPR038718 -
Sebi201g00058 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 625 IPR027417 -
Sebi201g00058 644 SMART ultradead3 74 314 IPR014001 -
Sebi201g00058 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 302 IPR014001 -
Sebi201g00058 644 Pfam SNF2-related domain 87 406 IPR000330 GO:0005524|GO:0140658
Sebi201g00058 644 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 560 643 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00058 Sebi-Chr201 1412480 1414885 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi201g00058 SNF2_N 5.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00058 K10875 - gmx:100811703 786.178