Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00046 ATGGACTCTACCTCCTTGCGATCAGTGGGACCATCAGCGACCAACGTACGACGCCGTGCAACACCTAACACCACTCACAGGCACGACAGATCCGTGGTTGGATTTGCGTTCAAGGAAATTTGGCATCCATATCAGAAACAAATTAAAGTTGCTAGGCGTTTGAATGACTCCCTTCATCCATGCTTGCCTAAGGTAGTACAATTCAAAGACCCTGCTGGAAATGTAAGCAACATTTCTGTAAAAATTCGGTCTGGAAGGCAATGCTTTGTTCAAGGTTTACGTCAGATGGGGCAGTTCTATGATCTTCACCATATAGTTCACCTGTATTACACATATGTTGGTAATGGTCAATTTGATATTAGAATAAAAAGGCCTCATGGCATAGGTGAGATTCAGTACCCTCAACCTCGACAACAAAATGTTCAACCTATCCCAGATGACCCGAAAGAGGTGCTTAGTGTGTCTGGATGTATCATATGGGAAACTCTTCTCACTAAGGCACAAATTAGAGGAATACACGGCCTGGTACTCCCTGTAAGGATTGTAACTGATTTCCTTGAGGAGGACCAAGAAATTATTCATATCAAGTTACCTAATGGTCAAGTGCAACCTTGGAACTTCCTTTGGAACACAACAATTCAAAGACACTGCAGGCTAGGCCAAGGCTGGTACCAATATTGTAGGGAAGAGCGACTACAGGAAGGAGATATGCTAATGTTCTGGAAATTGGATGGTGAAGACTTCATTAGGATGGACCTACGACGTCAAAGGGATTATCTACAATAG 786 0.4326 MDSTSLRSVGPSATNVRRRATPNTTHRHDRSVVGFAFKEIWHPYQKQIKVARRLNDSLHPCLPKVVQFKDPAGNVSNISVKIRSGRQCFVQGLRQMGQFYDLHHIVHLYYTYVGNGQFDIRIKRPHGIGEIQYPQPRQQNVQPIPDDPKEVLSVSGCIIWETLLTKAQIRGIHGLVLPVRIVTDFLEEDQEIIHIKLPNGQVQPWNFLWNTTIQRHCRLGQGWYQYCREERLQEGDMLMFWKLDGEDFIRMDLRRQRDYLQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00046 261 SUPERFAMILY DNA-binding pseudobarrel domain 158 250 IPR015300 -
Sebi201g00046 261 ProSiteProfiles B3 DNA-binding domain profile. 160 257 IPR003340 GO:0003677
Sebi201g00046 261 CDD B3_DNA 164 248 IPR003340 GO:0003677
Sebi201g00046 261 MobiDBLite consensus disorder prediction 1 20 - -
Sebi201g00046 261 Gene3D - 157 257 IPR015300 -
Sebi201g00046 261 MobiDBLite consensus disorder prediction 1 25 - -
Sebi201g00046 261 Pfam B3 DNA binding domain 161 251 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00046 Sebi-Chr201 1088625 1090207 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi201g00046 B3 4.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00046 - K05061 lja:Lj1g3v3386930.3 73.9442