Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00034 ATGAATACTAGGGAGACCGCACATGCCATCAGGAAGTTGCCCCTGACAAAAGCTAAAAGATACTTGGAAGATGTTTTGGCCCACAAGCAGGCCATTCCTTTCCGACGCTTCTGTCGTGGTGTTGGGAGGACAGCCCAGGCTAAGAATAGACATTCTAATGGGCAAGGACGCTGGCCTGTCAAGTCAGCTAGATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTCTATGTTTCTCATATCCAGGTTAACCAAGCACAGAAACAAAGACGTCGCACCTACCGAGCTCACGGAAGAATCAACCCTTACATGTCATCTCCTTGCCACATAGAGCTGATATTATCTGAAAAGGAAGAGCCTGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACAAGCAAGAAGAAGTCTCAAGCTCTTCGAAGTGGTGCTTCATCATAA 471 0.465 MNTRETAHAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQALRSGASS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00034 156 MobiDBLite consensus disorder prediction 142 156 - -
Sebi201g00034 156 Gene3D Ribosomal protein L22/L17 1 155 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sebi201g00034 156 SUPERFAMILY Ribosomal protein L22 2 128 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sebi201g00034 156 FunFam 60S ribosomal protein L17 1 149 - -
Sebi201g00034 156 NCBIfam 50S ribosomal protein L22 2 128 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sebi201g00034 156 Pfam Ribosomal protein L22p/L17e 2 126 IPR001063 GO:0003735|GO:0005840|GO:0006412
Sebi201g00034 156 CDD Ribosomal_L22 2 125 IPR001063 GO:0003735|GO:0005840|GO:0006412
Sebi201g00034 156 PANTHER 60S RIBOSOMAL PROTEIN L17 2 149 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sebi201g00034 156 MobiDBLite consensus disorder prediction 128 156 - -
Sebi201g00034 156 ProSitePatterns Ribosomal protein L22 signature. 101 125 IPR018260 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00034 Sebi-Chr201 880932 881762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi201g00034 2 156 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.742 3.50e-100 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00034 K02880 - jre:108982519 290.041