Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00025 ATGGATGTTGCTGAGGTTGAAGAAAATTTGTTTGCAGCCAGTGATGCAAAGTTACATGGAGAAATGTGCAAGGATCTTTCTGCAATATATTGCAAAATATTGTCTATATTTCCTTGTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCGAAGAATGTTCTTCAACACTGCTCAGAGTGTAGCAAACTTTACTTGGCTATAACTGGGGATGCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTATAGATAGTCTTAAGCTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGATTGATGAAATTGTCAATGAACTTGCTAGTATGGCATTTGCACTTGACCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCTAATGACAATAATGAACTTGAGTGTTTTCATCTAGCTGCTACTAGACTTGGAATCACATCTTCGAGAGCAGCTCTTACTGAACGAAGAGCTCTAAAAAAACTCATTGAAAGAGCTCGAGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTTCACCTCATGAGGAAATACTCGAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCATAGATCTCTTGAGGACTTTGTTCCTGGTGGTCATTGTCAGGCCTTCGATAGACAGCTTTCAAAGCTTAGTTCCTTTAATTTCAAGCCAAATAATAGGAGATCAGGGCAGATGCCCCTTCCACCTGAAGAGTTAAGGTGTCCGATATCCCTGCAGCTTATGAGTGATCCTGTAATAATTGCTTCTGGGCAAACATATGAAAGGTTATGTATAGAAAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGATCATCTTAATTTGACTCCTAATTACAGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGTCCTCCTGAATCTCTTGATTTCAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTAAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGGTATCTCAGAGCAAACTGGGGGGAATGCAGCTGAAAGTTTGTCAGGACAAGAGGAAGACAATGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGTGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACGTTTAAGGCTGCTACTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGTGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATTTTATCCTTGTTGGAGGGAATGATTTCAGACACAAGTTCATATGGTTGTGCAACCGCCCTGTATCTGAACCTTTCTTGCCTTGAAGAAGCCAAGCAGATCATTGGCACGAGTCCTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGCTAAAACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCCCTCTATAATCTTTCTACTGTGCCCCCCAACATTCCAAACCTCCTTTCATGTGGCATCATTAATGGCCTACAATCCCTTCTTGTAGGCCAGGATGATTGCATGTGGATAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTGTTTCCCAAGTGGGAAGAGAGGAAATTATGTTGACTCCTGGACTCATAGGCGCATTGGCTTCGATACTGGACACCGGTGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTATGTAACAGGAGTGAGAAGTGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTAAATGGAACATCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGACAGCGAGAACGGGACCAATCACCGGCTAAGACAATTCAATGCCAGCCTGAAACTAGTGATTTGTCCAAGCCTCCTCCTGAAACAAAACCTCTATTTTCAACGTTCAACGTGAAGGTGAAAGCGTTGTTTCCGGCCCGTGTTTCTCAGCTGGGAGTGCGCCAGCGGCAACTCGGTGTGATCGTTTTTGGGGGAAGAAGTGAAGGCATAAAGGGCGAAAAGGTTGGTGATGATAACACAAAAGATCATGAGAGTGTTAACTGGTGA 2391 0.4245 MDVAEVEENLFAASDAKLHGEMCKDLSAIYCKILSIFPCLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDAVLLKFEKAKCALIDSLKLVEDIVPQSIGCQIDEIVNELASMAFALDPSEKQVGDDLIALLQQGRKFNDSNDNNELECFHLAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLFHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVHRSLEDFVPGGHCQAFDRQLSKLSSFNFKPNNRRSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERLCIEKWFSDGHNTCPKTQQKLDHLNLTPNYSVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKLKGVKVVPLEESGISEQTGGNAAESLSGQEEDNEQYFSFLKVLTEVNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALMQFLQSAVREGNVMAQESGAMALFNLAVNNNRNKEIMISAGILSLLEGMISDTSSYGCATALYLNLSCLEEAKQIIGTSPQAVQFLIQILQAKTEVQCKLDSLHALYNLSTVPPNIPNLLSCGIINGLQSLLVGQDDCMWIEKCIAVLINLAVSQVGREEIMLTPGLIGALASILDTGELLEQEQAVSCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRERDQSPAKTIQCQPETSDLSKPPPETKPLFSTFNVKVKALFPARVSQLGVRQRQLGVIVFGGRSEGIKGEKVGDDNTKDHESVNW 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00025 796 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Sebi201g00025 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Sebi201g00025 796 PANTHER U BOX DOMAIN-CONTAINING 21 710 - -
Sebi201g00025 796 MobiDBLite consensus disorder prediction 717 731 - -
Sebi201g00025 796 CDD RING-Ubox_PUB 280 332 IPR045210 -
Sebi201g00025 796 SUPERFAMILY RING/U-box 277 354 - -
Sebi201g00025 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Sebi201g00025 796 MobiDBLite consensus disorder prediction 709 737 - -
Sebi201g00025 796 Coils Coil 175 195 - -
Sebi201g00025 796 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Sebi201g00025 796 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Sebi201g00025 796 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Sebi201g00025 796 SUPERFAMILY ARM repeat 426 708 IPR016024 -
Sebi201g00025 796 Coils Coil 695 715 - -
Sebi201g00025 796 Gene3D - 427 529 IPR011989 -
Sebi201g00025 796 Gene3D - 530 709 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00025 Sebi-Chr201 565992 571280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi201g00025 1 733 U-box Gene Family AT1G67530 68.850 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00025 - - gmx:100804344 1239.17