Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00016 ATGCAGGCCTTATCGAGACTCTGCACTGCAACTCCGCCGCACACTCCCAACCTATACGACGACGTCTATCGTCTTGAGCTTCCTCTTCAGCACTGCAACACTCTCTCGCCAACGCCAAGTTCAGTTCCAACATTTGTGAGCGTAATGAGAAGACCGAAATCGAAGGACTTTAAGAAGCAACACCGAGCCTCAGAAGAAGAGGAGATAAAGCTCTTGGATGCATGGATCCAAAGCCAGAAACCAGACTCTGGTTCGAACCCAATATCTCTTCCTCCTCTCCCCAAAAACTCCCCCATTGGGCGTCTCGACGATGGCACCTTCTCGCGCTACGCTGGTGTCAAGAGCTTCGTCCACTTACCCCTCTCCAAGAGAACCAAAGATGGCTTGCGAGAAGCCAAGTTCGTTTCTATGACCGACATACAGAGAGCTTCTCTTCCTCACGCGCTTTGTGGCCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGCAAAACCCTCGCTTTCACTATCCCTGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCACCTACCAGAGAATTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAATGAACTCAACATATTGATTTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTATTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCAAAGCGCAGACAAACCATGCTCTTCTCAGCAACTCAAACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCTGAGTATCTGAGTGTGCATGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCCCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCAAAAACAATTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAACTCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGACTTGATTTTAATAAGGCAGTTGACTGGGTTGTGGATTGTCCTGAAAATGTAGCATCTTATATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGGTGGAAAGTCAGTTTTATTTCTGCTGCCCTCAGAAATTCAAATGCTTGAAAGGTTAAAAACAGCAAAGGTTCCAGTGCATTTTAATAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTCTGTTGGCATCTTTACTTGTCAAGTTCCCAGACCTGCAGCATCGGGCTCAAAGGGCGTTTGTCACATATTTGAGATCCATTCATATCCAAAAGGATAAAGAGATCTTTGATGTTATGAAACTACCTATTGATGAGTATTCAGCATCATTAGGTTTGCCAATGACTCCCAAAATCCGTTTTCTCAACCAGAAAATTAAATCTAAAGCTGTGTCAACAGAATTAGTTTTAGTTGAACCAGAGGTTTCAAACAAGGAAAATGTCTTGGAGGTTTCGAGAAAGAAGCTAGACTCTGTTGTTTTCAAAGATGAGGAAACTGAAAACGATCTTCTTCAGGAAGCTGATACCTCAAATGAAGGCGAAATGAAGTCATCTGATATTGGAGAAATAATGCCAGCAACTCGGTTATTGAAGAAGAAGAAGCTCAAGATTAATGTACATAGACCATTGGGGACTCGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGCTAGCCAGGATTGCTGACACACAAAGTGGCAAGGAAACGTTGCTACTTGACCCAGAACAAAAAGCTGAATACTACAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAGCTTTTAGAGCGCCAGCGTCGAAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGGCAGGGAATGTTGGAGAAGAGGATGACCAAGTTGATACTTCTGGGTCAGAAGGTGACGAAACTGTAAATAGACGGCATAAAAAGAATAAAGTATACTTTGATAGTGACAGTGATGAGGGTGAAAGAAATGAAGTCACACGGAATGCAGGAATTAGTGCTGGCTCCATTACTTTAGAGGAGCAAGAAGCGCTGGCTTTGAAATTGTTGTGCCCTATAATCACTGCCACTGTGACGCTGTTGGAGTTGAACATTTTCCCTATTTTCGTCATTGAAGGTGAAGGGGATATAGATAGTAGTGTTGAAATTGTAGCTGAAGAACCTGGTCACATGGATGTAGAGAGTAATGTTGAGGTTGTAGTTGAAGAACCTGGTGTAGAGGATAAAGAGAGCCCTATTGAGGTTGTAGTTGAAGAAGATGGTGAAAGGGATGAGGAGAGTCCTGCTGAGGTTGTAGTTGAAGAAGTTGGTGAAGGGGGATAA 2637 0.4346 MQALSRLCTATPPHTPNLYDDVYRLELPLQHCNTLSPTPSSVPTFVSVMRRPKSKDFKKQHRASEEEEIKLLDAWIQSQKPDSGSNPISLPPLPKNSPIGRLDDGTFSRYAGVKSFVHLPLSKRTKDGLREAKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFTIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTMLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTIVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKLSVLFSTDVAARGLDFNKAVDWVVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKTAKVPVHFNKPRKELLQPVSGLLASLLVKFPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTELVLVEPEVSNKENVLEVSRKKLDSVVFKDEETENDLLQEADTSNEGEMKSSDIGEIMPATRLLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKETLLLDPEQKAEYYKRMREDLKKADKEDKLLERQRRREKRIKQKMKWKAGNVGEEDDQVDTSGSEGDETVNRRHKKNKVYFDSDSDEGERNEVTRNAGISAGSITLEEQEALALKLLCPIITATVTLLELNIFPIFVIEGEGDIDSSVEIVAEEPGHMDVESNVEVVVEEPGVEDKESPIEVVVEEDGERDEESPAEVVVEEVGEGG 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00016 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 502 IPR001650 -
Sebi201g00016 878 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 266 274 IPR000629 -
Sebi201g00016 878 PANTHER RNA HELICASE 82 613 - -
Sebi201g00016 878 Gene3D - 104 326 IPR027417 -
Sebi201g00016 878 SMART helicmild6 373 454 IPR001650 -
Sebi201g00016 878 Coils Coil 685 705 - -
Sebi201g00016 878 MobiDBLite consensus disorder prediction 855 870 - -
Sebi201g00016 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 320 IPR014001 -
Sebi201g00016 878 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 114 142 IPR014014 GO:0003724
Sebi201g00016 878 SMART DUF4217_3 493 556 IPR025313 -
Sebi201g00016 878 Gene3D - 331 619 IPR027417 -
Sebi201g00016 878 Pfam DEAD/DEAH box helicase 138 308 IPR011545 GO:0003676|GO:0005524
Sebi201g00016 878 CDD DEADc_DDX10 125 323 - -
Sebi201g00016 878 MobiDBLite consensus disorder prediction 855 878 - -
Sebi201g00016 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 470 IPR027417 -
Sebi201g00016 878 Pfam Domain of unknown function (DUF4217) 498 554 IPR025313 -
Sebi201g00016 878 SMART ultradead3 133 337 IPR014001 -
Sebi201g00016 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 322 IPR027417 -
Sebi201g00016 878 MobiDBLite consensus disorder prediction 737 764 - -
Sebi201g00016 878 CDD SF2_C_DEAD 334 463 - -
Sebi201g00016 878 MobiDBLite consensus disorder prediction 712 765 - -
Sebi201g00016 878 Pfam Helicase conserved C-terminal domain 346 453 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00016 Sebi-Chr201 381674 389629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi201g00016 113 471 Eukaryotic Initiation Factors Gene Family AT3G19760 28.689 1.57e-34 135