Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00007 ATGAAAGAGGAAATCAAGTCAGAGTTCAGAAAAAGTGGGTTCGATCTTGATGAAGAAGAAGAAATACTGAACAAATGTCTCACTTTCTGCATCAACTACAGTCTCAGCCCTTCCGATCTCGTCTCAAGCTGGGAAGTTTATTACCTGAATAGACTACTGAAGGGATCGACCGTTCAAAATGCTGAAATGGATGGCTTTCTGCTGCATCTACAAAATAATAAGAAAGAAGATGTTATAATGGAGGAAGCTGGTTTGCATACTTACTCTATCAGAGACGCAGAAATGTACTGGTTGTTGCTGCACATTAAGATAGACTGCAAACTCCAGTGGTTTTTGTTCATTGCTGTATCCTGTATGATTATGTTCTTAAGTAATGATGATGAAACAAAGGACAATGCACCCGGAACTCCAACGGATCATCATCAAGATCTTTATTCACCTGCACATGATTCAACACCTTTAATGTACGGGAGTGTTTTATCTTCTGGAAAACCATCAAAACTAGTAACACCCTTTTCAAAGCGGACAGATAGGTTTGCAGTGAAATTTAGCATCAACACCATTCCTGATGTAGAGAATGGAATGCAAGAACCTAATCATGAGAATGCTGAGAATGACGAGGATGATGTTATCAAGAAAGTTCTACCCCGTAAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCAAACCAGGTTGCAGATTTATGTATGATAGGACAGAGGATAGGCTTAATGCAATAGAAACCCGAATTAGAAAGCATACAAGGGCACTTGTAGCCTCTGGGTTCTATGAAGAACCAACAGACCCTACAATTGCTTCCCAGAGAAACATTTTTTCCATTGGCATGATTTGTTGTGATGGAGAAGGCCGCCTAAATGAGAAGTCTGTCATGCTGCAAAGCAGTGTTGAGCATTCTGGAGGGGAATGTGTACGCCTAGACTTAGGACATTTAAGCCATTTTTCAGTTTTTCCTGGCCAGGTAGTAGGTATTGGAGGGCATAATCCTAGTGGGCATTGTTTGGTTGCATCTAAATTGGTGGATTCTATACCTATCTCTGTTGCTGATAAGGATTTGAATCCTGCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGATCTGCTTTGTGAACAGAGAGAGTTATCAATGATTATTGCAGCGGGCCCTTTTACTACAACAGACAATTTGTTATTTGAGCCTCTTGTAGAACTGCTGGCATATGCAAAGCGAAGACCGCCACAGTTGCTTGTATTGCTGGGACCATTTATTGACTCTGAACACCCAGACATTAAGAAAGGAATCACGGAGAGGAGTTTTGATGAATTATTTCGTTTTGAAGTCCTAAGGAAGTTGGAAGATTATGTAGAATGTATGGGTTCAGCAGCACGTGTTCTTCTTGTACCATCTATACGGGATGCTAACCACGATTTTGTTTTTCCTCAGCCTGCATTGGATATCAGTCTACCTGATCTCAAATCTCAGATAGTCAGTCTCACTAATCCTGGAATCTTTGAGGCAAATGAGGTCAAAATTGGTTGCTGCACCGTGGATATTCTCAAGCAGGTCAGTGGAGAGGAGATATCACGAACTGCAGCAGATGGAAAACCTAGTGATCGCTTGAGTAGACTTGCAAACCATATTCTTAATCAACAAAGCTTCTATCCACTTTACCCACCGGCAGAAAGTGTTCCCTTGGACTTTTCTCTTGCTCCAGAAGCTCTTCAACTCTCATTGGTTCCAGATGTTCTTATCTTACCCTCAGACATCAAGTACTTTGTCAAGGTGCTTAATAGCGAAAGTGAAGGGATAAGCCCCATGAAATGCATTGCCGTCAATCCGGGAAGATTAGCCAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTTTGGTGGGGGTCCGGACAAGATTAACGCTTCAATTGTTGGCATATAA 1941 0.4178 MKEEIKSEFRKSGFDLDEEEEILNKCLTFCINYSLSPSDLVSSWEVYYLNRLLKGSTVQNAEMDGFLLHLQNNKKEDVIMEEAGLHTYSIRDAEMYWLLLHIKIDCKLQWFLFIAVSCMIMFLSNDDETKDNAPGTPTDHHQDLYSPAHDSTPLMYGSVLSSGKPSKLVTPFSKRTDRFAVKFSINTIPDVENGMQEPNHENAENDEDDVIKKVLPRKRCSLVVHGSGPKPGCRFMYDRTEDRLNAIETRIRKHTRALVASGFYEEPTDPTIASQRNIFSIGMICCDGEGRLNEKSVMLQSSVEHSGGECVRLDLGHLSHFSVFPGQVVGIGGHNPSGHCLVASKLVDSIPISVADKDLNPAKKQAIDKENQPTDLLCEQRELSMIIAAGPFTTTDNLLFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGITERSFDELFRFEVLRKLEDYVECMGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLTNPGIFEANEVKIGCCTVDILKQVSGEEISRTAADGKPSDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDIKYFVKVLNSESEGISPMKCIAVNPGRLAKGEGGGTFVELDFGGGPDKINASIVGI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00007 646 Pfam DNA polymerase alpha/epsilon subunit B 386 596 IPR007185 GO:0003677|GO:0006260
Sebi201g00007 646 Gene3D - 1 67 IPR043034 -
Sebi201g00007 646 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 632 IPR016722 -
Sebi201g00007 646 FunFam DNA polymerase alpha subunit B 366 531 - -
Sebi201g00007 646 Gene3D - 365 530 - -
Sebi201g00007 646 Gene3D - 537 641 - -
Sebi201g00007 646 PIRSF DNA_pol_alpha_2 1 633 IPR016722 -
Sebi201g00007 646 FunFam DNA polymerase alpha subunit B 1 75 - -
Sebi201g00007 646 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00007 Sebi-Chr201 208334 213638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi201g00007 3 646 Core DNA Replication Machinery Family AT1G67630 58.025 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00007 K02321 - gmx:100795306 964.14