Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi201g00001 ATGGAACAACTCTTACTTGAGAAGGAATTACCAATACCATCCTCTTTGGAAGAAGATGGAGAAACCTTCACAAACGCAAACATATGGAGCAAACTCACATTCCTATGGCTGAACCACATTTTCAAGAGAGGGAGAATTCAAAAACTTGAACTTCCTCATATTCCTTCTGTTCCTCATTCTGAAACAGCAGAGAATGCCTCCTCCATGTTGGAAGATTCAATTGGAAATCAGAAACTTGAAGGGGTTTCTTTGACCAAAGTTATTGTCCATTCTATCTGGAAATCCTTGGTCTTGAATGCAATTTTTGCAGGTTATATCCCATCCATTGCAGCATTTGTTGTCACTATTTTGGTTATGATATTCAATTCACCTTTGGCTAATGTCCAAAAAAGTTTCCACTCTAAGATCATGGAAGCTAAGGATTCAAGAATCAAAATGACTTCAGAGACCTTGAAGAACATTAGAATTTTAAAAATGCATTCTTGGGAGTCCATTTTCTTGAAGAAACTTCTCCACCTAAGGAAAATGGAGAGGGGGTGGCTGCAGAAATACCTCTACACATGTTCAACAGTAGCCACTCTATTTTGGACATCTCCAACATTAGTTTCTGCTGTCACTTTTGGTGTCTGTTTACTGGTGAAAACAGAATTAACAGCAGCTACAGTTCTATCAGCTTTAGCAACTTTTCGTATTTTACAAGAACCAATCTACAACCTACCTGAGCTTATCTCCATTATAGCTCAAACAAGAGTATCTGTTGATCGAATCCAGGAGTTCATCAACCAAGAGGATAAAACACTTTTTGTGATTAGTCATGCTTTAAAATCTTCTTCTGAAATTGCTATTGAAGTCAAGGCAAGTGAATATGCATGGGAAACAGATAAAAACCATAAGAAACCAACAATTCAAATTACAGCAACTCTGAAGATAAAGAAGGGTCAAAAGGTTGCAATTTGTGGATTAGTAGGATCTGGGAAATCAAGCTTACTCTGCTGTATGCTTGGTGAGTTATCAAGGATTTCTGGGGAAGGAATGGAAATCAAGGGAAGTAGAAGTTATGTGCCCCAAAGTCCTTGGATTCAATCTGGGACTATAAGGGAAAATATTTTGTTTGGAAAGGAAATGAATAAGAACTTGTATGAGAAAGTTTTGGAAGGTTGTGCTTTGCACCAAGATATGAACATGTGGGTTGATGGAGATTTGACAATGGTGGGGGAGAGAGGCATAAACTTAAGTGGAGGACAAAAACAAAGGATTCAACTAGCAAGGGCTGTTTACAATAATTCAGATATTTATTTTCTGGATGATCCTTTCAGTGCTGTTGATGCACATACTGGAACACATTTGTTTAAGAAATGTCTAATGCAACTTCTATATGAGAAAACAGTTGTTTATGCTACCCATCAACTGGAATTCTTGGAAGCAGCTGATCTCATTGTAGTGATGAAAGATGGAAAAATTGTAGAGGCAGGAAAGTATAAAGATTTGATAGAACTTCCCAATTCTGAACTTGTTGAACAAATGGCTGCTCATAAAGAAACATTGAAGCAAATAAATCCATGCAAAGATGATGATTCTGTGAGCTGTAGATCCTACCAAACAAATCAGATTGAAGGTACTGAAAAAAATCTTCCAAAGACTTTCAAAGATTGCAAGCTTTTGGAGAAAACCAATGAAGAGGAAGTAGAGACTGGTCGAGTGAAATGGAATGTTTACTCATCCTTTGTTACATCAGCTTATAGAGGTGCACTTGTTCCCTTTGTTCTTCTGTGCCAAATTTTCTTTCAGGGATTGCAGATGGGAAGCAATTATTGGGTTGCTTGGGCCACAGAACAAAGGGGCAAGTCTTCTACGGATCAAAGTACAATAGACACAGACATACCATACAGATTAGCTGGACTTGTATTTGCACTTATCCAGTTGGTGAGTATCATTGTCCTAATGTCCCAGGTTGCATGGCAAGTCATTCTCCTGTTTCTTGTTGTGCTTGCTATCTCCATCTGGTACCAGGCTTATTACATCACTAGTGCAAGGGAATTAGCCAGGACGGTAGGGATCCAAAAGACTCCAATTTTGCATCACTTCTCAGAATCAGTTGCAGGAGCTGCCACAATTCGTTGTTTCAATCAAGAGCAAAGATTTTTGGCTAAAGTTATGACTCTAATTGATGATTATTCTCGAGTAGCCTTTCACAATTATGCTACCATGGAATGGTTGTCTATCCGAATCAATTTTCTCTTTAATTTGGTCTTCTATTTTGTTCTCACCATCTTGGTTATTTTGCCAAGGTCTGCCATTGATCCTAGCTTGGCAGGATTGGTAGCTACTTATGGTTTGAACCTGAATATCCTACAGGGTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATCTCAGTTGAGAGAATATTACAGTTCACTAACATACCAAGTGAAGCACCCTTAATAATTCAAGATTGTAGGCCTGAGCCTGAGTGGCCTAGGGAGGGAAAAATTGAACTGCATAACCTTCATATACAGTATGATCCTGCTTCTCCTATGGTTCTCAAAGGTGTCACTTGCACCTTCCCAGGTCAAAAGAAAATTGGAGTTGTAGGCAGGACAGGAAGTGGGAAATCCACCTTAGTTCAAGCTCTCTTTCGAGTGGTGGAGCCTTCTGCAGGATGGATACTTATTGATGGTATAGACATTTGCAATATTGGTCTGCAGGACCTAAGATCTAAGCTTGGTATAATTCCTCAAGATCCAACCTTGTTTCAAGGCACTGTGAGGACTAACTTGGATCCTCTAGAACAACATTCAGATCAAGAACTTTGGGAGGTTCTCAGTAAGTGCTATCTGTCAGAAATAGTAAGGCAAGATGCAAGGCTTCTTGATGCACCGGTGGCCGAGAATGGTGAAAATTGGAGTGTGGGGCAAAGGCAGTTGGTTTGCCTTGCTAGGCTGCTGTTAAAGAAAAGAAGAATTTTGGTCTTAGATGAAGCAACTGCATCCATTGACACTACAACTGATAATTTAATTCAAAAGACTATTAGGGAAGAGACAAGTGGATGCACAGTCATTACCGTGGCACATAGAATTCCTACAGTTATTGATAATGACTTGGTTTTGGTCCTTGATCAAGGGAAGATTGTAGAGTATGATCGCCCAGCTCAATTGCTACAGAATAATTCTTCATCATTCTCAAAGTTGGTGTCAGAATTTTTGAGCAGATCATCCCAAAATAACTACCAAAAGAATACACAATAA 3255 0.3905 MEQLLLEKELPIPSSLEEDGETFTNANIWSKLTFLWLNHIFKRGRIQKLELPHIPSVPHSETAENASSMLEDSIGNQKLEGVSLTKVIVHSIWKSLVLNAIFAGYIPSIAAFVVTILVMIFNSPLANVQKSFHSKIMEAKDSRIKMTSETLKNIRILKMHSWESIFLKKLLHLRKMERGWLQKYLYTCSTVATLFWTSPTLVSAVTFGVCLLVKTELTAATVLSALATFRILQEPIYNLPELISIIAQTRVSVDRIQEFINQEDKTLFVISHALKSSSEIAIEVKASEYAWETDKNHKKPTIQITATLKIKKGQKVAICGLVGSGKSSLLCCMLGELSRISGEGMEIKGSRSYVPQSPWIQSGTIRENILFGKEMNKNLYEKVLEGCALHQDMNMWVDGDLTMVGERGINLSGGQKQRIQLARAVYNNSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLYEKTVVYATHQLEFLEAADLIVVMKDGKIVEAGKYKDLIELPNSELVEQMAAHKETLKQINPCKDDDSVSCRSYQTNQIEGTEKNLPKTFKDCKLLEKTNEEEVETGRVKWNVYSSFVTSAYRGALVPFVLLCQIFFQGLQMGSNYWVAWATEQRGKSSTDQSTIDTDIPYRLAGLVFALIQLVSIIVLMSQVAWQVILLFLVVLAISIWYQAYYITSARELARTVGIQKTPILHHFSESVAGAATIRCFNQEQRFLAKVMTLIDDYSRVAFHNYATMEWLSIRINFLFNLVFYFVLTILVILPRSAIDPSLAGLVATYGLNLNILQGWVIWNLCNVENKMISVERILQFTNIPSEAPLIIQDCRPEPEWPREGKIELHNLHIQYDPASPMVLKGVTCTFPGQKKIGVVGRTGSGKSTLVQALFRVVEPSAGWILIDGIDICNIGLQDLRSKLGIIPQDPTLFQGTVRTNLDPLEQHSDQELWEVLSKCYLSEIVRQDARLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTTTDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDQGKIVEYDRPAQLLQNNSSSFSKLVSEFLSRSSQNNYQKNTQ 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi201g00001 1084 Gene3D - 293 533 IPR027417 -
Sebi201g00001 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1060 IPR027417 -
Sebi201g00001 1084 FunFam ABC transporter C family member 3 817 1069 - -
Sebi201g00001 1084 CDD ABC_6TM_ABCC_D1 89 256 IPR044746 GO:0140359
Sebi201g00001 1084 SUPERFAMILY ABC transporter transmembrane region 105 263 IPR036640 GO:0005524|GO:0016020
Sebi201g00001 1084 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 617 1073 - -
Sebi201g00001 1084 Pfam ABC transporter 851 999 IPR003439 GO:0005524
Sebi201g00001 1084 CDD ABC_6TM_ABCC_D2 617 809 IPR044726 GO:0140359
Sebi201g00001 1084 CDD ABCC_MRP_domain2 832 1052 - -
Sebi201g00001 1084 Gene3D ABC transporter type 1, transmembrane domain 82 266 IPR036640 GO:0005524|GO:0016020
Sebi201g00001 1084 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 248 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi201g00001 1084 Pfam ABC transporter 307 438 IPR003439 GO:0005524
Sebi201g00001 1084 Pfam ABC transporter transmembrane region 617 760 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi201g00001 1084 Pfam ABC transporter transmembrane region 108 235 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi201g00001 1084 SMART AAA_5 312 486 IPR003593 GO:0016887
Sebi201g00001 1084 SMART AAA_5 860 1051 IPR003593 GO:0016887
Sebi201g00001 1084 ProSitePatterns ABC transporters family signature. 411 425 IPR017871 GO:0005524|GO:0016887
Sebi201g00001 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 499 IPR027417 -
Sebi201g00001 1084 CDD ABCC_MRP_domain1 282 486 - -
Sebi201g00001 1084 Gene3D ABC transporter type 1, transmembrane domain 614 815 IPR036640 GO:0005524|GO:0016020
Sebi201g00001 1084 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 834 1068 IPR003439 GO:0005524
Sebi201g00001 1084 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 617 797 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi201g00001 1084 FunFam Multidrug resistance-associated protein 4 269 526 - -
Sebi201g00001 1084 Gene3D - 817 1070 IPR027417 -
Sebi201g00001 1084 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 284 509 IPR003439 GO:0005524
Sebi201g00001 1084 SUPERFAMILY ABC transporter transmembrane region 616 814 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi201g00001 Sebi-Chr201 22245 27580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi201g00001 282 498 Calmodulin-binding Proteins AT2G36910 31.624 6.58e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi201g00001 - - cave:132179728 1316.98