Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi200g00039 ATGAAGATTGCTTCCTTCTTCACCAAGGCTTTCCACAGCTTCCCTTCCTACTCCAAGATCGTGCTCCTCTGCACTCTCAGTGGTGGCGGTGTGGTGTCATACTCAGAATTACAATCAAATACTAAACCTCCTGTTATAGATCCTAATGAGCCAAAGAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGGTACCAGTTTCCTGAAGGATCTAGATGCATCCCTATATGATGTTCAGGTTGTTTCACCACGTAACTACTTTGCATTCACTCCTCTATTACCCAGTGTCACTTGTGGGACTGTTGAAGCAAGAAGCATTGTGGAGCCAGTCAGAAACATCATAAAAAAGAGAAAAGGAGAAATTAAATTTTGGGAGGCAGAATGCCTGAAGGTTGATAATGCAAACAAAAAGGTTTTGTGTCGGTCCCATATTGACAACAATTTAGTGGGAAGTGGCGAATTTGCTTTGGACTATGACTACTTGGTTATAGCAATAGGAGCACAAGTAAACACATTTAACACCCCTGGTGTCAGGGAGAATTGTCATTTTCTGAAGGAGGTAGAGGATGCTCAGAAGATCAGAATGTCTGTGATAGATTGCTTTGAGAAGGCTGTTCTTCCATCTCTATCTGAAGAAGAACGTAGGACAAATCTGCATTTTATAGTTGTTGGAGGGGGTCCAACTGGTGTGGAATTTGCTGCTGAGCTTCATGACTATATCCAAGAAGACTTAGTCAAATTGTACCCATCTGTCAAAGATATAGTGAAGATAACAGTGATTCAATCAGGAGATCACATCTTAAACACGTTTGATGAAAGAATTAGTGCATTTGCTGAGCACAAGTTTGGAAGAGATGGTATAGAAGTTCAAACGGGATGTCGAGTTGTCAATGTTAATGACAAGGAAATTACAGTAAAAGTGAAATCAACAGGAGAGTTTTGTTCTGTACCCCATGGATTGGTTGTCTGGTCCACTGGAATTGCAACTCGGCCAGTTGTGAGAGACTTTATGGAACAAATTGGTCAGGCTGAAAGGAATGTCCTAGCAACAAATGAATGGCTGCGAGTGAAGGAATGTGATACTGTGTATGCTATTGGCGATTGTTCTTCAATAGTTCAACGTAAAATCATGGACGATATCTCAGAAGTTTTTGAAGCTGCAGACAGAGACAACTCTGGTACCTTAACTATTGAGGAATTCAATGATGTGATGGATGATATCATCGTAAGATATCCACAAGTTGAACTCTACTTGAAGAGCCAACATGTGATTGATTTGGCTGCTATGTGGAGAGATTCCCAAGGAAATGAGAAAAAAGAAATAGACATAGAAGGGTTTAAGCTGGCCCTTTCTCATGTGGATGCACAGATGAAGAGTCTACCAGCAACTGCACAGGTTGCTGCTCAACAAGGTGCGTATCTTGCTAGATGCTTTAACCGCATGGATCAGTGTGCAGAGAATCCTGAAGGTCCTCGACGATTTGGTGGATCTGGACGCTACAAGTTTCGTCCCTTCCGGTATAAGCATTTTGGACAATTTGCTCCTCTTGGAGGAGAGCAGGCAGCCGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGTACAAGGGTGTTAGTTATATCAGATTGGACTAGAAGATTCGTTTTTGGAAGAGATTCTAGTCGTATTTAG 1728 0.423 MKIASFFTKAFHSFPSYSKIVLLCTLSGGGVVSYSELQSNTKPPVIDPNEPKKKKVVVLGTGWAGTSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECLKVDNANKKVLCRSHIDNNLVGSGEFALDYDYLVIAIGAQVNTFNTPGVRENCHFLKEVEDAQKIRMSVIDCFEKAVLPSLSEEERRTNLHFIVVGGGPTGVEFAAELHDYIQEDLVKLYPSVKDIVKITVIQSGDHILNTFDERISAFAEHKFGRDGIEVQTGCRVVNVNDKEITVKVKSTGEFCSVPHGLVVWSTGIATRPVVRDFMEQIGQAERNVLATNEWLRVKECDTVYAIGDCSSIVQRKIMDDISEVFEAADRDNSGTLTIEEFNDVMDDIIVRYPQVELYLKSQHVIDLAAMWRDSQGNEKKEIDIEGFKLALSHVDAQMKSLPATAQVAAQQGAYLARCFNRMDQCAENPEGPRRFGGSGRYKFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVISDWTRRFVFGRDSSRI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi200g00039 575 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Sebi200g00039 575 SUPERFAMILY EF-hand 371 461 IPR011992 -
Sebi200g00039 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 421 574 - -
Sebi200g00039 575 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Sebi200g00039 575 PANTHER NADH DEHYDROGENASE 49 575 IPR045024 GO:0003954|GO:0006116
Sebi200g00039 575 SMART efh_1 380 408 IPR002048 GO:0005509
Sebi200g00039 575 Gene3D - 44 393 - -
Sebi200g00039 575 Gene3D - 434 574 - -
Sebi200g00039 575 SUPERFAMILY FAD/NAD(P)-binding domain 214 373 IPR036188 -
Sebi200g00039 575 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Sebi200g00039 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Sebi200g00039 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Sebi200g00039 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Sebi200g00039 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 405 - -
Sebi200g00039 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 372 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi200g00039 Sebi-Chr200 1292144 1296640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi200g00039 7 575 Chloroplast and Mitochondria Gene Families AT4G21490 64.049 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi200g00039 K03885 - gmx:100793566 963.37