Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi200g00025 ATGGGTGAGGAGAGATCTGCTTCACAGTACAAGAGAGTGAAGATCCATGGAAAAGTTCTATTGGGATTTATGTTGATCTGCTTTGTACAGTTTTCTCTTGCAGACACTAATCCTACTGATGTTGCTGCAATTAATAGCTTATATACTGCATTGGGCAACCCTGTTCTTCCTGGGTGGGTTTCAAGTGGGGGAGACCCGTGCGGACAAGGGTGGCAAGGCGTTCAATGTAATGGTTCAGAAATACAATCAATAGTCCTGAATGGAGCAAATTTGGGAGGAGAACTGGGTGATAGCTTGGGAACGTTTGTTTCTATCAGAGCAATAGCTCTAAGCAACAACAACATTGGGGGAAGCATTCCATCCAGTTTGCCAGTCACCTTGCAAACCTTTTTTCTTTCAGATAACCAGTTCACAGGAAGTATTCCAACCTCTTTATCTACATTGACTGAACTGACTGACATGTCTCTTAACGATAATCTTTTAACTGGAGAAATACCAGATGCCTTTCAGTCTCTTATGCATTTGATCAATCTAGATTTATCTAGTAATAATTTGAGTGGGGAATTGCCTCCATCTCTGGAGAATTTGTCAGCTCTGACCACCTTAAATTTACAGAACAATAATCTGTCTGGGACCCTTGATGTTCTACAAGACCTCCCACTGAAAGATTTGAATGTCGAGAACAACCAGTTTGCTGGACCAATACCTCAAAAGTTGTTCAGCATCCCTAACTTCAGACAAGATGGAAACCCGTTTAATCTCAGTGGCAATGCTACTGTAGCTCCAGCTCATCCACCTCGTTCTCCAGTGACACCACCACCACCAGGAACTGTGGTTTCTGGTACTCCTTCTGGACGTGTTCCTACTAAACAGGCTGATGGACCAAGTGCAGCAAAGGAATCAAGTTCTGGGAAATCGAAAAAGTCTACCAAAAGGGTGGTTTGGATAACTATTTCTGGTATATTGGTGTTTCTTATTCTGGCACTGGCGCTTGTTCTCTTTATTCCAAGATGTAGCAGAAGAGAACGGGTTGACAGAACTTCCAACTCCAAGCAACATCAAATTGGTGCATATGGAGTACCAAAAGGAGCTGTTGTGAAGCCTAAAGAGGATCATCAAGCAGAGAAAGACAAGAAAAGCATGGGAACACTACCAAAGCTGTTAGATCATGAGATAGATATGAGTGCACTAGATGTGATTGTGGAGCCAACCACATTCAGAGGGGCTGACATCAATCCTTCCAAAAAAAGTCCAGTTCCTCCCACTTTCGCAAAATCATTCACCATTGCATCCCTTCAACAATATACAAATAGCTTTTCGCAAGACAATCTTATAGGATTAGGCATGCTGGGGACTGTGTATAGGGCAGAGCTTCCTGATGGGAAGATACTTGCTGTGAAGAAACTGGACAAGAGAGTTTCTGATCACCAAAAGGATGAAGAGTTTCTTGAACTGGTAAACAATATTGACAGAATCCGGAATGCAAATATTGTTGAGCTTATTGGGTACTGTGCAGAGCACGGTCAAATGCTTCTAATCTATGAGTACTGCAGTAATGGGTCACTACAGGATGCACTCCATTCAGACGATGAATTCCAAACAAGACTGTCATGGAATACTCGCATTCGGATAGCACTTGGGGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCTGCTAATATTCTCCTTGATGATGATTTATCTGTGCGTGTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTCTGTTAGTCAGCTCTCAGGACAACTGCTAACAGCTTATGGCTATGGGGCCCCAGAATTTGAGTCAGGAATTTACACATACCAGAGTGATGTGTACAGCTTTGGAGTGGTTATGTTAGAACTCTTGACAGGCCGTCAGTCCTATGACAGGAAGCGCCCTCGAGGAGAGCAGTTTCTGGTAAGATGGGCAATTCCTCAACTTCATGATATTGATGCATTATCAAGAATGGTTGATCCTTCTCTGAATGGAGAATACCCTGCCAAATCATTGTCAAATTTTGCGGACATTATTTCTAGATGTGTTCAGTCAGAGCCAGAATTTAGGCCAGCAATGTCAGAGGTTGTCTTGTACTTACTAAATATGATAAGGAGGGAATCTCAGCAAAATGAATAG 2178 0.4256 MGEERSASQYKRVKIHGKVLLGFMLICFVQFSLADTNPTDVAAINSLYTALGNPVLPGWVSSGGDPCGQGWQGVQCNGSEIQSIVLNGANLGGELGDSLGTFVSIRAIALSNNNIGGSIPSSLPVTLQTFFLSDNQFTGSIPTSLSTLTELTDMSLNDNLLTGEIPDAFQSLMHLINLDLSSNNLSGELPPSLENLSALTTLNLQNNNLSGTLDVLQDLPLKDLNVENNQFAGPIPQKLFSIPNFRQDGNPFNLSGNATVAPAHPPRSPVTPPPPGTVVSGTPSGRVPTKQADGPSAAKESSSGKSKKSTKRVVWITISGILVFLILALALVLFIPRCSRRERVDRTSNSKQHQIGAYGVPKGAVVKPKEDHQAEKDKKSMGTLPKLLDHEIDMSALDVIVEPTTFRGADINPSKKSPVPPTFAKSFTIASLQQYTNSFSQDNLIGLGMLGTVYRAELPDGKILAVKKLDKRVSDHQKDEEFLELVNNIDRIRNANIVELIGYCAEHGQMLLIYEYCSNGSLQDALHSDDEFQTRLSWNTRIRIALGAARALEYLHEQCQPPVVHRNFKSANILLDDDLSVRVSDCGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRKRPRGEQFLVRWAIPQLHDIDALSRMVDPSLNGEYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLLNMIRRESQQNE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi200g00025 725 Pfam Protein tyrosine and serine/threonine kinase 442 711 IPR001245 GO:0004672|GO:0006468
Sebi200g00025 725 Gene3D Transferase(Phosphotransferase) domain 1 517 725 - -
Sebi200g00025 725 MobiDBLite consensus disorder prediction 342 379 - -
Sebi200g00025 725 MobiDBLite consensus disorder prediction 265 279 - -
Sebi200g00025 725 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Sebi200g00025 725 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 407 516 - -
Sebi200g00025 725 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 725 - -
Sebi200g00025 725 MobiDBLite consensus disorder prediction 282 306 - -
Sebi200g00025 725 Gene3D Phosphorylase Kinase; domain 1 410 516 - -
Sebi200g00025 725 Gene3D Ribonuclease Inhibitor 37 264 IPR032675 -
Sebi200g00025 725 MobiDBLite consensus disorder prediction 251 306 - -
Sebi200g00025 725 MobiDBLite consensus disorder prediction 365 379 - -
Sebi200g00025 725 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Sebi200g00025 725 SUPERFAMILY Protein kinase-like (PK-like) 416 713 IPR011009 -
Sebi200g00025 725 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 76 710 - -
Sebi200g00025 725 SUPERFAMILY L domain-like 36 245 - -
Sebi200g00025 725 ProSiteProfiles Protein kinase domain profile. 439 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi200g00025 725 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi200g00025 Sebi-Chr200 876419 883422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi200g00025 26 720 Strubbelig Receptor Gene Family AT4G03390 62.350 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Sebi200g00025 PK_Tyr_Ser-Thr 4.2e-43 CL0016