Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi200g00002 ATGCAGCACCACCGTGTCTCCGCCGTGTTTCTTTTAAGCTTCTGCTTTAGACTTGTGCTAATATGCGCGCAGGGACAGCCTCAACACCATGTCTTTGATCCACATTGGTATCCGGGCACCGCCACCTGGTACGGTGACCCCGAGGGAGACGGTAGCACCGGAGGGGCATGTGGGTATGGTACGTTGGTGGACGTGAAGCCGTTGAGGGCGAGAGTAGGAGCAGTGGGGCCAGTGCTGTTTAGAAGTGGAGAAGGGTGCGGGGCGTGCTATAAGGTGAAGTGCTTGGACGCAAGCATATGCGCGAAGCGAGCAGTGACGGTTATAATAACAGATGAGTGCCCTGGTTGCCCCTCAGATAGAACACACTTTGACCTCAGTGGCGCCGCCTTTGGCCGCATGGCTGTTGCCGGCGAGAATGGTCAACTCAGGAACCGAGGTGAAATCCCAGTCATTTACCGAAGGACACCGTGCATATATGGTGGCAAAAATATTGCCTTCAAAGTTAATGAAGGTTCCACACCTTTTTGGCTATCACTTCTGGTCGAGTTTGAGGAAGGAGATGGGGATATTGGCTCCATGCATATACAAGAAGCAGGGTCTAGTGAGTGGCTGCAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAAAGGACCTTTCTCTGTGAAATTAAGCACATCCACGGGGAGAAGCCTCACTGCTAAAAATGTTATTCCAAGCAATTGGTCTCCAAAAGGCACTTATACCTCTCGCTTAAATTTCTCTCCATAA 786 0.5076 MQHHRVSAVFLLSFCFRLVLICAQGQPQHHVFDPHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGPVLFRSGEGCGACYKVKCLDASICAKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAVAGENGQLRNRGEIPVIYRRTPCIYGGKNIAFKVNEGSTPFWLSLLVEFEEGDGDIGSMHIQEAGSSEWLQMNHLWGANWCIIGGPLKGPFSVKLSTSTGRSLTAKNVIPSNWSPKGTYTSRLNFSP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi200g00002 261 PRINTS Major pollen allergen Lol pI signature 112 127 IPR005795 GO:0005576|GO:0019953
Sebi200g00002 261 PRINTS Major pollen allergen Lol pI signature 134 149 IPR005795 GO:0005576|GO:0019953
Sebi200g00002 261 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Sebi200g00002 261 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Sebi200g00002 261 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576|GO:0019953
Sebi200g00002 261 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Sebi200g00002 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 162 IPR007112 -
Sebi200g00002 261 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Sebi200g00002 261 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Sebi200g00002 261 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Sebi200g00002 261 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Sebi200g00002 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Sebi200g00002 261 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Sebi200g00002 261 Pfam Lytic transglycolase 77 151 IPR009009 -
Sebi200g00002 261 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Sebi200g00002 261 CDD DPBB_EXPB_N 36 157 - -
Sebi200g00002 261 FunFam Expansin B3 22 158 - -
Sebi200g00002 261 Gene3D - 22 157 IPR036908 -
Sebi200g00002 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Sebi200g00002 261 SMART dpbb_1 72 152 IPR007112 -
Sebi200g00002 261 FunFam Beta-expansin 3 159 260 - -
Sebi200g00002 261 SUPERFAMILY Barwin-like endoglucanases 32 161 IPR036908 -
Sebi200g00002 261 Gene3D - 159 260 IPR036749 -
Sebi200g00002 261 PANTHER EXPANSIN-B3 14 259 - -
Sebi200g00002 261 Pfam Expansin C-terminal domain 164 244 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi200g00002 Sebi-Chr200 34337 36753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi200g00002 9 197 Expansin Gene Family AT4G28250 69.792 7.10e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi200g00002 K20628 - gmx:100780112 480.715