Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00069 ATGCAGGTGAGTGTTCCATGCAGTAGCCTTTTTGACATAGTGACCGTTCGATGTGGCCACTGCACCAATCTATGGTCCGTCAACATGGCCGCGGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGAGGTGGTGGGCAGTGCAATAATCCAGAGTATAGGATTGACACTAGTGCTGCAGGCTCCACTTCAAAATGCAACAATAGGATTGCTGCAATGCGTGCACCCACCACTCATCTTGTAACTCAGGAAAGGCTCCCGAGAAGAGGCAGCGCGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGACAATGTCTCTGAGAAGCATTTGATGCCAAGGGCTGCGCTACTGAACAAATGA 468 0.4808 MQVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGGGGQCNNPEYRIDTSAAGSTSKCNNRIAAMRAPTTHLVTQERLPRRGSAEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDNVSEKHLMPRAALLNK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00069 155 Pfam YABBY protein 2 128 IPR006780 GO:0007275
Sebi1g00069 155 PANTHER PROTEIN YABBY 6-RELATED 2 138 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00069 Sebi-Chr1 1156164 1158269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00069 1 138 C2C2-YABBY Transcription Factor Family AT2G26580 58.553 8.13e-53 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sebi1g00069 YABBY 1.1e-36 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00069 K25796 - gmx:100499942 255.373