Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00066 ATGAGCTCTGTTGCAAGCCCGGATGATCCTTTTGCTTTGCAGATGCTCTTTGTTGATGAAGAAGGTGGGCGGATTGAGGCAACTGTGCAAAAGCATATCATGCATAAGTTTTCTAACAGTATTGTTGAAGGGCAAGTCTACAGGATTACAAGGTTTGGAATTTTGCGCAACGGTGGGCATGATTTCAAGATCATCTTCAACTCTAACACCCAAGTGATCGCGTGTCCTGACATTGATATTCCACTCCTTGGGTTGGCCTTAACAAAGACTTCTAATATCAAAAGGACAAGAGGTTTCTCGGACTACCTCTTAGATTTTATGGGGATTGTGACGGCTATCTCAGAGGAGACTAAGCTGAACAAGGAAGGGAGGGTTACACGTCTAATGTCCATAGACTTGGTTGATGAAATGGGAGAGATTCAGTGTGCTATTTTCGGGAATTTGATGGACACTGTGAAGGGATATCTCACTGAGCCTCGCTGCGGACTTCTTGTGATCATCATTCAGCTGGCAAAGTTTAATGTCTATAAGGGCCAAGTTGGAATTCAGAATGTGATGAACGCGTCCAAAATCTGGTGGAATCCAGACATACCTCAGGCTGTGGAGTTTAAAAATGGGCTAGCAGTTCATGAGATTGAAAGTGATCTTGCTATTTCAATCATACCAGAAAAGCCTCGCCCTGTCTCACTTAGAGAGGAGTTTTTGGAAATGTATCCGAAGAAGAGTGTCAGGGAGTTGAATCAACTGTTGGAGGAAGGGTCTTTCATTATTTTGGGAACAATAACTGAAATCTTGGATGATAGTTTGTGGTGGTACATGGCATGTACATGTATGAAGTCTGTTACCTATGAACTGGGCTTCCCTTTCTGCACTGGTTGTAACATTCCTGTGTACAACATAACACCTAGGTACAAAATCAAGTTGGCTGTCACGAATGGAGAAGATATCACACACCTTATAATGTTTGATTCAGAATGTCGCTTTCTGCTAGATAAGTCTTGCTATGACCTGCTGGAGGAGGGAAAGGTTAATGGCTGCTCTGGTTATCCACAAGAAATAATGGATTTCGTGGGGAAGGAACTGCTTTACCGAGTTGAGATAAACGAAGATGCCATGCTTGCCTATGATGGGTGCATAAAGGTGAAGAAGTTGTGCTCTGACTCATCCATTATCAGTGACTACAAAGAAAGGGTCGATGATGAGACTCCACTTAAGGTTGTTAGCCTATTAATCCTTCCATCATTTAAATTCTACTAA 1257 0.4248 MSSVASPDDPFALQMLFVDEEGGRIEATVQKHIMHKFSNSIVEGQVYRITRFGILRNGGHDFKIIFNSNTQVIACPDIDIPLLGLALTKTSNIKRTRGFSDYLLDFMGIVTAISEETKLNKEGRVTRLMSIDLVDEMGEIQCAIFGNLMDTVKGYLTEPRCGLLVIIIQLAKFNVYKGQVGIQNVMNASKIWWNPDIPQAVEFKNGLAVHEIESDLAISIIPEKPRPVSLREEFLEMYPKKSVRELNQLLEEGSFIILGTITEILDDSLWWYMACTCMKSVTYELGFPFCTGCNIPVYNITPRYKIKLAVTNGEDITHLIMFDSECRFLLDKSCYDLLEEGKVNGCSGYPQEIMDFVGKELLYRVEINEDAMLAYDGCIKVKKLCSDSSIISDYKERVDDETPLKVVSLLILPSFKFY 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00066 418 Gene3D - 79 213 IPR012340 -
Sebi1g00066 418 CDD RPA1_DBD_C 240 370 IPR047192 -
Sebi1g00066 418 SUPERFAMILY Nucleic acid-binding proteins 88 208 IPR012340 -
Sebi1g00066 418 SUPERFAMILY Nucleic acid-binding proteins 11 79 IPR012340 -
Sebi1g00066 418 CDD RPA1_DBD_A_like 9 72 - -
Sebi1g00066 418 Pfam Domain of unknown function DUF223 15 93 IPR003871 -
Sebi1g00066 418 Gene3D - 236 384 IPR012340 -
Sebi1g00066 418 Gene3D - 6 78 IPR012340 -
Sebi1g00066 418 SUPERFAMILY Nucleic acid-binding proteins 251 382 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00066 Sebi-Chr1 1115340 1117401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00066 17 377 Core DNA Replication Machinery Family AT5G61000 23.232 2.03e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00066 - - lja:Lj6g3v0884310.1 323.553