Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00065 ATGAAGAAGGTGAGGAGAAAGATCGGGAAGTATGAGGTTGGTCGAACTATTGGCGAAGGTACATTCGCCAAGGTTAAATTCGCAAAAAACACGGAGACAGGGGAGAGTGTGGCTATTAAAGTGATGGCTAAGAGCACCATTCTCAAGCATAGAATGGTTGAGCAGATTAGAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGGTTGCATGAGGTTTTGGCCAGTCAGACCAAGATCTACATAATTCTCGAGTTTGTAATGGGAGGGGAGTTATATGATAAAATTGTTCAGCTGGGAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCGGTTGCTCATTGTCATAAAAAGGGTGTGTACCATAGAGACTTGAAGCCCGAAAACCTTCTTCTTGATGCTTATGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAGCAGGGTGTTGGCCTTCTTCATACCACATGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCAGCAATCAAGGTTATGATGGCGCAGCAGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACATTGTACCGAAGGATCAATGCTGCAGAATTTGTCTGCCCATTATGGTTTTCTGCTGGTGCAAAGACATTGATACATAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATTGAAGCAATAAGGAAAGATCCATGGTTCCAGAGAAACTATTTACCTGTCAAACTCAGGGAACATGAGCAAGTGAATTTGGATGACGTCCAGGCTGTTTTTAATGATATTGAGGACCAATATGTTGCTGATCGGTCAGAAATTACTGAGGGAGGTCCTTTGGTAATGAATGCATTTGAGATGATTACCTTATCCCAAGGGTTGAATCTTTCACCACTATTTGACAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTTTCCCGTAAACCAGCAAGAGTTATAATTTCATCCATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGATGAGGATTGAAGGAGTTTCAGCAAATACAGTTCGACAATTTGCAGTGGTCTTGGAGGTTTATGAAGTTGCACCATCCCTTTTCATGGTAGATGTTCGAAAGGCAGCTGGGGATACTCTTGACTATCACAAGTTCTACAAGAATCTTTGTGCCAAACTAGAAAGCATTATTTGGAAACCGGCAGAGACTATGCCAGATTCTGCAGCTCTGACTCAAGGTTTTCAGCGTGAATGA 1347 0.4187 MKKVRRKIGKYEVGRTIGEGTFAKVKFAKNTETGESVAIKVMAKSTILKHRMVEQIRREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQLGKLSENESRRYFQQLIDAVAHCHKKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVGLLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGVILYVLMAGYLPFEEADLPTLYRRINAAEFVCPLWFSAGAKTLIHKILDPNPKTRVKIEAIRKDPWFQRNYLPVKLREHEQVNLDDVQAVFNDIEDQYVADRSEITEGGPLVMNAFEMITLSQGLNLSPLFDRHQDYVKRQTRFVSRKPARVIISSIEAVAESMGLKVHSRNYKMRIEGVSANTVRQFAVVLEVYEVAPSLFMVDVRKAAGDTLDYHKFYKNLCAKLESIIWKPAETMPDSAALTQGFQRE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00065 448 SUPERFAMILY Protein kinase-like (PK-like) 8 318 IPR011009 -
Sebi1g00065 448 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1g00065 448 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1g00065 448 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Sebi1g00065 448 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Sebi1g00065 448 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Sebi1g00065 448 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1g00065 448 Pfam NAF domain 307 366 IPR004041 GO:0007165
Sebi1g00065 448 FunFam Non-specific serine/threonine protein kinase 4 304 - -
Sebi1g00065 448 CDD CIPK_C 311 421 - -
Sebi1g00065 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 415 - -
Sebi1g00065 448 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Sebi1g00065 448 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Sebi1g00065 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Sebi1g00065 448 Gene3D Kinase associated domain 1, KA1 308 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00065 Sebi-Chr1 1082037 1096393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00065 1 372 CBL-interacting serine-threonine protein kinases AT5G35410 74.731 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi1g00065 Pkinase 1.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00065 - - tpra:123920042 797.349