Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00060 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCATGGGTCTCAGAAATTCGACATCCACTTCTGAAGAGAAGGGTGTGGCTAGGCACATTTGAAACAGCAGAGGAAGCAGCACGAGCATATGATCAAGCAGCCATTTTGATGAGTGGTCGAAATGCAAAAACCAATTTCCCAATAACCCAAACTCCAGAAGGTGACCCAAAGAGTGAGGAAAGCCCTTCCACCTCAAAGGATCTGGAAGAAATTCTACACGCAAAGCTTAGAAAATGTGGCAAGGTACCTTCCCCTTCCATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCAGGGAGGAGTTCTGATTCAAATTGGGTGATGACGGTTCAGCTGGGAAACTCAAACAAGAGCACCAATGAGAGTAATAATGCTATGCCTTGTTCATCTGATTTACAGTCTCCATCAACAGGGGAAACAGGACAGGGAGTGGTGAGAGGAGGAGAGATTGATGAAGAGGAGAGAATTGCCCTCCAAATGATAGAGGAACTTCTCAATGACAGGAACTGTCCTAGTCCTAACACTACTTCATTTAACAATATACAACAACCTGAGGATCATGACAGCTTTTTTCTTTAA 651 0.4531 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSEESPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRSSDSNWVMTVQLGNSNKSTNESNNAMPCSSDLQSPSTGETGQGVVRGGEIDEEERIALQMIEELLNDRNCPSPNTTSFNNIQQPEDHDSFFL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00060 216 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Sebi1g00060 216 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Sebi1g00060 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Sebi1g00060 216 MobiDBLite consensus disorder prediction 191 216 - -
Sebi1g00060 216 MobiDBLite consensus disorder prediction 138 165 - -
Sebi1g00060 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Sebi1g00060 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Sebi1g00060 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Sebi1g00060 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Sebi1g00060 216 MobiDBLite consensus disorder prediction 192 210 - -
Sebi1g00060 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 148 - -
Sebi1g00060 216 MobiDBLite consensus disorder prediction 60 82 - -
Sebi1g00060 216 MobiDBLite consensus disorder prediction 138 170 - -
Sebi1g00060 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sebi1g00060 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Sebi1g00060 216 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00060 Sebi-Chr1 986212 986960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00060 1 190 AP2-EREBP Transcription Factor Family AT1G15360 63.500 1.99e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1g00060 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00060 - - gmx:100787517 326.25