Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00050 ATGGCAGCATGTGGTGAAAAAGAGTGGGTGGAAAGATCTGAGCAATCAGGTGGCATAGAAGACGGAGATCAACAGCAAAAGGCATTTGATGATGCAGATTACTCATCCTCAGCGATTGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTAAGGATGAGGATGAGGATGGAGAGGACAGGGAGGATATTACCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAGCAACTTTAATAACTCATTCATCAGCTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTGCAAACTCTTCCAGTTGCTGGCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTCGGCAGATCAGTTGCAAAGCAGGCTTGCAATTGGTGGAATCAAGTGAGCATGTGTCTGTCAGGGTATGAAATTAAGCAAGGAAATCAAGGTGGCAACACTTGGAGAAAACTGATGCAAACTGGTGAAAATGTAAACGGGGAAGATGCTATTGATGTTGATGACAATGATGAAACTATTGATTGGATTTTGAAGCAGCCTGAACTTGTTTTTGTCATGGAGAAGAATAGTGCAGGCCAAGTGTCAGGCGATGAAGATGTTGCAAAAGGGTCAGTCAATTCCTTTCCATGGCTGTATGTAATGCAGCTCCTTTCTATGATGGATCTGTGCTCAGCTGGATGCTATTGTGAAGAACTGCTGAGTAGTGTCGACCTCATGTCGAGGTCTATGCTGGATGTCACTTCTAAGGTGAGTGATCTTGAGAAAAGAATTGTTATCTTGTCCTCCAAGCTGAAAATTCTTGAGTCACAAATTGCTTTAGTTAGAGACACCAACTTGAAGGGAAAAAAAACAACAGAAGAGGATAGCTTTGAAAGAGCTTTGGTATATACCCCTAAGCAACACGGTCCACCAACATCTGCAACATCATCGAAGGCGTCACCTCCAAAGTTTAAGCATTTTGCCAAAAACCGAGGAAAGAGAACGAAAGACCCAAAGGTTGAAGCTAGCGAAAAGAATACACCTAAAAAGAGAAATGCAGCTGAAATAATGACTTCTAAGGAGGCTACTAAAACGGGAAAGAAACGCAACGAATCTGAAAGTGACACAAAGATTAAGCCCTTTGGCAAAAAGGGACCTAAGCCACTCACGGCAATGCAACTTACTGCGCGGGAGGAGCGATTGTCATTATATGTGTTCCAAGTTAATGGAGATCCAAGTGAGGTGTTGTTCAAGCTTGGGGATTCAACCTTAACCAGGGATGAGATGTCATGGTTTTGCCATCCCAATGAAATAAGGGAAAAGGAGAATGGACATTCATTTTGGATTTTACCACCTGAGTTTGTGAATGATGTTTATAAATGGAATGCTGAAACTATACTAGAGAAATATGCAAAAGATTGGATGCCCCCATTATTGGGTCTCAAATATATATATGTCCCAGTGCAAGAATGCACCAGCCAATGGTGGTTGATGGTGATCTCAATAAATGAGAGGGTGGTTTATCATTTGGACTCGTTCTTAGAAGATAGATCTCAACATGCAAGGAAATTGACTATAGACAAAATGTGCATGGTTTTGTCTCAATGCATTGCTTCTTCTGATTACTATCCAACAAAAGATTTCAAGCACATAAACATGGACAAATGGGAAATAAAGGTGTTTGATAAGAACCCATATGAACCATACGGTGAAAACTCAGCTGTGTGGATCATTGAGTGGATGCATATGATGGATGCTTTCCCAACAAACTTTGTGTCCCAGATTAATGAGCAAGTGGTTCGAATGAGGATATGTTTGGGACTTTTATGTGGACATCATAATGAGCTATGGCCAGAAATTCAGGAAAAAGCTGACTACTTCTGGGACAATCTCCCGTGA 2031 0.4185 MAACGEKEWVERSEQSGGIEDGDQQQKAFDDADYSSSAIEGKSNSKKRRDIKDEDEDGEDREDITSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQSNFNNSFISSQDSTFGATSINGIDLQTLPVAGQLQAQSLAKLQAAGLGRSVAKQACNWWNQVSMCLSGYEIKQGNQGGNTWRKLMQTGENVNGEDAIDVDDNDETIDWILKQPELVFVMEKNSAGQVSGDEDVAKGSVNSFPWLYVMQLLSMMDLCSAGCYCEELLSSVDLMSRSMLDVTSKVSDLEKRIVILSSKLKILESQIALVRDTNLKGKKTTEEDSFERALVYTPKQHGPPTSATSSKASPPKFKHFAKNRGKRTKDPKVEASEKNTPKKRNAAEIMTSKEATKTGKKRNESESDTKIKPFGKKGPKPLTAMQLTAREERLSLYVFQVNGDPSEVLFKLGDSTLTRDEMSWFCHPNEIREKENGHSFWILPPEFVNDVYKWNAETILEKYAKDWMPPLLGLKYIYVPVQECTSQWWLMVISINERVVYHLDSFLEDRSQHARKLTIDKMCMVLSQCIASSDYYPTKDFKHINMDKWEIKVFDKNPYEPYGENSAVWIIEWMHMMDAFPTNFVSQINEQVVRMRICLGLLCGHHNELWPEIQEKADYFWDNLP 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00050 676 Pfam Myb-like DNA-binding domain 71 119 IPR001005 -
Sebi1g00050 676 SUPERFAMILY Cysteine proteinases 450 654 IPR038765 -
Sebi1g00050 676 MobiDBLite consensus disorder prediction 333 432 - -
Sebi1g00050 676 MobiDBLite consensus disorder prediction 1 64 - -
Sebi1g00050 676 Gene3D - 65 123 - -
Sebi1g00050 676 Pfam Ulp1 protease family, C-terminal catalytic domain 521 626 IPR003653 GO:0006508|GO:0008234
Sebi1g00050 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 125 IPR017930 -
Sebi1g00050 676 FunFam Two-component response regulator 65 122 - -
Sebi1g00050 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 69 122 IPR006447 GO:0003677
Sebi1g00050 676 SUPERFAMILY Homeodomain-like 67 120 IPR009057 -
Sebi1g00050 676 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 118 IPR044841 GO:0003700|GO:0006355
Sebi1g00050 676 Coils Coil 301 321 - -
Sebi1g00050 676 Gene3D Adenoviral Proteinase; Chain A 433 654 - -
Sebi1g00050 676 MobiDBLite consensus disorder prediction 1 28 - -
Sebi1g00050 676 MobiDBLite consensus disorder prediction 378 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00050 Sebi-Chr1 862230 868654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00050 14 167 Response Regulator Gene Family AT3G16857 56.085 1.70e-49 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi1g00050 Peptidase_C48 8.7e-05 CL0125