Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00049 ATGGTTGGAAGCAATGAATCAATGACAAGTGATACTCTAGAGTTACAGGAACGACAAGCTTCCGTAATCTACTTAGAAGAGGATGAGGAAATCCCCATAGAACATGGTGACGCATATTTCATTGATGAAGTAGGTGGTGGTGTATTCCTTGTTGATAATGATTGGGATGGTGAACAATCTGGAGAAGATGAACAATGGGATGAGCCTTGTACCGAAATTCCTGGTTTTGGGGATAGGGTCCCTAGATTTAGGATTGATAGTGAGGAGGATATTAAAGGGATGGACTTGAAGGCATTTAGTCCACATGAAATTGAAATGTATGACTTTGGTAGCATGGAATTGGCCTACAAGTTCTATAGTTCTTATGCAATGAGGAATGGATTTTGTGTTAGGAAATCATCTATTGTGAGAAGCAAAAAAACAAGGGAGCCATATCAACAAGAGTATGTTTGTAATAGAGCAGGCTTTAGACGGGATAATGGGAAAAGTGTTGAAGATATGAAACGTGAGCCTAGAGTTAATTTTAGATGTGGATGTTCTGCATTATTTCGTGTTCACATTGACTTTGTGACTTCCCGATGGTATTGTACTTGGTTTGATGATGATCACAACCATGATTTGTTGGATCCAATACACTGTGGGATGCTTCCAGCACATAGGAAGATGTCTGCTAGTGAAATAATGCAGATGAATGAAATGATGAAAGTTGGTATTAGTCCCCCTCACATTTATAGGTCATTTGCTTTGCAAGCCGGAGGTTATCAGAAAATTGGTTTTAGGAAGAAGGACTTGTATAACCAGATCCATCGTCAAAGGCGTGAGCAATGTTCAGATGCGGTGGAAGCTCTAAAATACTTGAAGGATATTGGAGGGAAGGATGGAAAGCCCGGTTTCACAGCTGAGTTAAAGAAGTGCATGTTGGGTGATTATGATTTGGATGAGTTTAGCCAAGTTTGGGATGAAATGGTCAGCAAGTATCATTTGGAGGACAATCATTGGGTCAATGCACTGTATGAGAAAAGGTCAATGTGGGCTACAGCTCATATCCGGGCATATACGATTCAAAGAAAGGAAGATGACTTCGCATCTCTACATGGGGACCCTGTGCTCCAAACCAAATACCCTTCCATTGAGAAATCTGTTGCAAAATATTTAACGAAGGAGTTGTTCATGAAATGTCGGTACTTTATTAACAAAGCAGCTGACTTTGTTGTAGTTGGCTGTTCAAAAACGCTAACAGTGTCCATTTTCACTGTTTGTAAGCGTGGAGGACGAGGCAAGGAATGGAAAGTGACACATGATGCAGGTAACAATGAATTTAAATGTGATTGCATGAGAATGGAGTCTCGGGGTTTGCCATGTGAACACCTAGTTGCCGTTCTTGTTCACTTGAGGATAAATGATCTTCCTAGGTGTTTTGTTTTGAAACGGTGGTCAAAAGGTGCGAAGGATGGTTTTTATGACCGTAATAGAGATGGAGACACTACATGGAATTCTTCACTGGTTTTTAGAAGTGATGAAGCGATGCATGTATGTAGATTGATTATTAAATTGAACGATACTGCCGAAGAACACCACGAATTTATGGAAAAGCTTTTACAAATCTATGAGGAACGCAAGGCTAGGAAATCATGCCTTAATGGGGATGGTAGTTCTTCAACAGTGCGTAGGAGGAAAAAGTGCTCTATATGTAAGGTTCCTGGGCACAATAAGCTAACTTGTCCACACAGTCAAAGACAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCCTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTCCTGGGCACAACCAGCACACTTGTCCACACAGTCAAAGAGAAGCACCATTGCATGAAAGTGAAGATGATGACATCTATTTCCCTACCCAAGACTTGGACACTGACATGATTGGTAGTCATATGTCAATGTGA 2052 0.4103 MVGSNESMTSDTLELQERQASVIYLEEDEEIPIEHGDAYFIDEVGGGVFLVDNDWDGEQSGEDEQWDEPCTEIPGFGDRVPRFRIDSEEDIKGMDLKAFSPHEIEMYDFGSMELAYKFYSSYAMRNGFCVRKSSIVRSKKTREPYQQEYVCNRAGFRRDNGKSVEDMKREPRVNFRCGCSALFRVHIDFVTSRWYCTWFDDDHNHDLLDPIHCGMLPAHRKMSASEIMQMNEMMKVGISPPHIYRSFALQAGGYQKIGFRKKDLYNQIHRQRREQCSDAVEALKYLKDIGGKDGKPGFTAELKKCMLGDYDLDEFSQVWDEMVSKYHLEDNHWVNALYEKRSMWATAHIRAYTIQRKEDDFASLHGDPVLQTKYPSIEKSVAKYLTKELFMKCRYFINKAADFVVVGCSKTLTVSIFTVCKRGGRGKEWKVTHDAGNNEFKCDCMRMESRGLPCEHLVAVLVHLRINDLPRCFVLKRWSKGAKDGFYDRNRDGDTTWNSSLVFRSDEAMHVCRLIIKLNDTAEEHHEFMEKLLQIYEERKARKSCLNGDGSSSTVRRRKKCSICKVPGHNKLTCPHSQRQAPLHESEDDDIYFPTQDLDTDMIPGHNQHTCPHSQREAPLHESEDDDIYFPTQDLDTDMIPGHNQHTCPHSQREAPLHESEDDDIYFPTQDLDTDMIGSHMSM 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00049 683 ProSiteProfiles Zinc finger SWIM-type profile. 429 465 IPR007527 GO:0008270
Sebi1g00049 683 Pfam FAR1 DNA-binding domain 117 208 IPR004330 -
Sebi1g00049 683 Coils Coil 519 539 - -
Sebi1g00049 683 PANTHER OS01G0519700 PROTEIN 297 540 - -
Sebi1g00049 683 SMART 26again6 440 467 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00049 Sebi-Chr1 856550 859573 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi1g00049 FAR1 6.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00049 - - ahf:112708893 227.639