Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00043 ATGGGGAAGGGAGGCCAAGATTATGAGAGAAAAGAGAACACGAGTTCTGAGTCTTCGGATCGTGAAATCTTCAAGGCGTGGTCCAAGGACGTGCGTGAATGCGAGGAACACTTTAAGGTGAGAGTGAAAACGGGGTTGAATCACGACGAGGTTGAGAATCGGCGCAAGATCTATGGCTCGAACGAATTGGAGAAGCACGACGGACAGTCTATTTGGAGTTTGATTCTGGAACAGTTCAATGACACGTTGGTTCGGATTCTTCTCGCCGCTGCCATCATCTCCTTCGTACTTGCTTGGTACGATGGCGAAGAAGGTGGCGAGATGGAGATTACGGCTTTTGTGGAGCCTCTGGTGATATTCCTGATATTGATTGTGAATGCAATCGTTGGGGTATGGCAAGAGAGCAATGCGGAGAAGGCACTTGAGGCCTTGAAGGAGATTCAATCGGAGCACGCCATGGTGATTCGAGATAGCGTGAAAATCCCTAATTTGCCGGCCAAGGATCTTGTGCCTGGTGATATTGTGGAGCTTAAAGTTGGCGATAAGGTGCCTGCAGATATGCGGGTTGTGGCATTGATTAGCTCCACTTTGCGATTGGAGCAGGGTTCCTTGACTGGAGAGAGTGAAGCAGTGAATAAGACTAACAAGCCTGATCCTGAGGATGCTGATATTCAAGGCAAGAGGTGTATGGTTTTCGCGGGGACGACTGTTGTTAACGGGAACTGCATTTGCTTGGTCACTCAGACTGGCATGGATACCGAGATTGGGAAGGTGCATAAGCAGATACACGTAGCGTCGCAGAGTGAGGATGATACCCCCTTGAAGAAGAAGCTCAATGAGTTTGGAGAGAATCTAACCATTATAATTGGGTTGATATGTGCTTTGGTTTGGCTCATCAATGTCAAGTACTTCCTGACCTGGGAGTATGTGGATGGGTGGCCAAGGAACTTCAAGTTTTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCTGCCATTCCAGAGGGTTTGCCTGCAGTCATCACGACTTGCCTCGCACTAGGTACTCGAAAGATGGCCCAGAAGAATGCCCTGGTTCGGAAGCTACCAAGCGTGGAAACTCTGGGTTGTACAACTGTGATTTGTTCAGATAAAACTGGTACTTTGACTACGAACCAGATGTCTGTGACAAAACTAGTAGCTATTGGCCATAATGTAGACACCCTGCGAGCCTTCAAGGTGGAAGGAACTACTTACAATCCATCTGATGGTAAAATAGAGAACTGGGTAACGGGTGGATTGGATGCTAATCTTCAGATGATAGCAAAAATAGCTGCTGTCTGTAATGATGCTGGAGTCACACAGTCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCCTTAAAGGTTTTGGTAGAGAAGATGGGTCTTCCTGAAGGATCTAATGATGCACGATCAGCAAGCAAGAATACCTTACTAAGTTGTTGTGAATGGTGGAATGAACATGACCGGCGGATTGCAACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTGGACTCTGGTCCAGGGAAAAAGTCACTTCTGGTCAAGGGTGCTGTAGAAAATGTATTGGAAAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCTGTTGTGAATCTGGACAATAATGCAAGGAACCTCATATTACAAGCTCTTCATGAAATGTCAACTAGTGCATTACGCTGTTTGGGATTTGCTTACAAGGATGAGCTCAGTGCATTTAAAAACTACAATGGTAATGATGATCATCCAGCCCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTGAAGACTGCAGAGCAGCTGGAATTCGTGTTATAGTTATAACTGGAGACAATAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTGAACCCAATGAAGACATTAGTTCAAAAAGTGTAACTGGTAGAGATTTTATGGAAGTGCGTGATAAAAAAGCCTATTTGAGACAGAGTGGTGGGCTTTTGTTTTCGAGGGCTGAACCTAGGCATAAGCAAGATATTGTGAGGCTGCTCAAAGAGGAAGGAGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGCGCCTGCCTTGAAGCTTGCAGACATTGGTGTGGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTACTGGCAGATGATAATTTCAGTACCATTGTAGCAGCTGTTGGTGAAGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGTGAGGTTGCTTCCATATTTCTAACAGCTGCACTAGGTATTCCTGAAGGACTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACGGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTGATTAATTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACGGTTGGTGTTTTCATTATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGCGGGGATGGGCATACACTCGTCACTTACTCCCAACTTGCCAACTGGGGTCAGTGCTCCTCGTGGAAGAACTTCACTGCTTCTCCCTTCACTGCTGGTGCTAGAACTATTTCTTTTGATAATGATCCCTGTGACTACTTCCAGACTGGTAAAGTGAAAGCTATGACACTGTCTCTCTCTGTGTTGGTAGCCATCGAAATGTTCAACTCTCTTAATGCCCTATCTGAAGATGGAAGTCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTATGTGCCATTCTTATCACAAGTATTTGGCATCGTGCCCCTGAGTTTCAATGAGTGGCTTTTGGTTTGGCTGTTGCTTTGCCCGTCATTCTAA 3102 0.4513 MGKGGQDYERKENTSSESSDREIFKAWSKDVRECEEHFKVRVKTGLNHDEVENRRKIYGSNELEKHDGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHAMVIRDSVKIPNLPAKDLVPGDIVELKVGDKVPADMRVVALISSTLRLEQGSLTGESEAVNKTNKPDPEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMDTEIGKVHKQIHVASQSEDDTPLKKKLNEFGENLTIIIGLICALVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGHNVDTLRAFKVEGTTYNPSDGKIENWVTGGLDANLQMIAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSNDARSASKNTLLSCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGPGKKSLLVKGAVENVLERSSKIQLRDGSVVNLDNNARNLILQALHEMSTSALRCLGFAYKDELSAFKNYNGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGIRVIVITGDNKNTAEAICREIGVFEPNEDISSKSVTGRDFMEVRDKKAYLRQSGGLLFSRAEPRHKQDIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLANWGQCSSWKNFTASPFTAGARTISFDNDPCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLSQVFGIVPLSFNEWLLVWLLLCPSF 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00043 1033 SFLD C1.7: P-type atpase like 362 783 - -
Sebi1g00043 1033 Gene3D - 77 1030 - -
Sebi1g00043 1033 NCBIfam HAD-IC family P-type ATPase 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1g00043 1033 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1g00043 1033 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi1g00043 1033 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1027 - -
Sebi1g00043 1033 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Sebi1g00043 1033 Gene3D - 44 265 - -
Sebi1g00043 1033 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1031 IPR023298 -
Sebi1g00043 1033 SFLD p-type atpase 362 783 IPR044492 -
Sebi1g00043 1033 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Sebi1g00043 1033 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Sebi1g00043 1033 Pfam Cation transporting ATPase, C-terminus 816 1028 IPR006068 -
Sebi1g00043 1033 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Sebi1g00043 1033 SUPERFAMILY Calcium ATPase, transduction domain A 150 261 IPR008250 -
Sebi1g00043 1033 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Sebi1g00043 1033 Gene3D - 378 776 IPR023214 -
Sebi1g00043 1033 SUPERFAMILY HAD-like 379 835 IPR036412 -
Sebi1g00043 1033 Pfam E1-E2 ATPase 147 361 - -
Sebi1g00043 1033 FunFam Calcium-transporting ATPase, putative 127 263 - -
Sebi1g00043 1033 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Sebi1g00043 1033 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Sebi1g00043 1033 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Sebi1g00043 1033 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Sebi1g00043 1033 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Sebi1g00043 1033 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Sebi1g00043 1033 MobiDBLite consensus disorder prediction 1 21 - -
Sebi1g00043 1033 FunFam Calcium-transporting P-type ATPase, putative 627 776 - -
Sebi1g00043 1033 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 795 1033 - -
Sebi1g00043 1033 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 238 411 - -
Sebi1g00043 1033 Gene3D - 391 632 IPR023299 GO:0000166
Sebi1g00043 1033 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00043 Sebi-Chr1 605589 611438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00043 1 1031 Primary Pumps ATPases(2) AT1G07670 80.407 0.0 1703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00043 K01537 - gmx:100788807 1900.18