Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00038 ATGGCTGATGATGTGGTTAAAAGTGTTGAGAATGTACCTGTTCTTGTTCAACATCCAGTGCGAATGATTTCATTTCAGAAGGTTATAACAAAATATGAATCTAAAGTTGGGCAGACTCTGCCCCTTCCAAGGAAGTTTATACAAGAGTTTGTCCTTAAAAGCTGGGAAGAGTTGATACTGCAAGTTCATGATGGTCGAAGTTATTCATGTAAGTTGCTGTGGCGCCTTAAAAGTGAGAAAAAAGATTGCCATCTTGGAAAAAAATGGTACAACCTTGTACAAGACATGGCTCTGTCAAGGGGGGACAAGGTGGTCTTCGAGACCATAGAGAATGGTTTAAACAGGCTGAATGTGAAAATAATTCACAGGGGAAATTAG 378 0.3968 MADDVVKSVENVPVLVQHPVRMISFQKVITKYESKVGQTLPLPRKFIQEFVLKSWEELILQVHDGRSYSCKLLWRLKSEKKDCHLGKKWYNLVQDMALSRGDKVVFETIENGLNRLNVKIIHRGN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00038 125 SUPERFAMILY DNA-binding pseudobarrel domain 23 119 IPR015300 -
Sebi1g00038 125 Gene3D - 17 124 IPR015300 -
Sebi1g00038 125 CDD B3_DNA 24 121 IPR003340 GO:0003677
Sebi1g00038 125 ProSiteProfiles B3 DNA-binding domain profile. 25 124 IPR003340 GO:0003677
Sebi1g00038 125 SMART B3_2 25 124 IPR003340 GO:0003677
Sebi1g00038 125 Pfam B3 DNA binding domain 25 123 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00038 Sebi-Chr1 486530 487028 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi1g00038 B3 7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00038 - K24363 lja:Lj4g3v1330190.1 74.7146