Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00028 ATGGCAATGGCGCCCTCAACTTCCACTAATGGTTCTGGTAAGAAAGTCAGAAAACCTTACACTATTACCAAGTCTAGGGAAAGCTGGTCTGAGGAAGAGCATGACAAGTTTCTAGAAGCTCTTCAACTGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACGGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAAGTTCAAAAAAGTGGGACAGCAGCACATGTGCCTCCACCTCGTCCTAAGCGCAAAGCTACTCATCCTTACCCACAAAAGGCTTCAAAAAATGTTTTGGTGCCATTGCCAGCATCCATGGCTTATGTGTCTTGTTCCACTAATACCCTTGCACATGGGTTTGCCACATGGGATGAAAATTCCATACTCATGAACACTGGATCCAATAAATCCATGTCCTGTCAGGATGAACTCACCAATCTTCATGGAAATGAAGGCATGCACATTTCTTTTTGTCGTTCTGATATTGGATCAAAGGGGATAATTCGAATTGGCAACAGCAGTCTTAATGGTGTTGGGAACTCTGCTAGAAAGCTTCCAGCTTCTGAGATGCCAAAGCAAAGGAAACAGATTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTTATTGGAAGTGTTTTTGATCCTGATACAAAAGACCATGTCCACAAGCTTCAGGAAATGGATCCTATAAATTTTGAAACTGCTTTGTTGTTGATGAAAAACCTCACAGTCAACTTGTCTAGCCCTGACTTTGAGCCCGTTGGGAAGGCCTTATCAGTATACGATGTCAATACCAAGACAGTAGGAGCTACTGCAGGAATTGATGCCAAGAAGCAGACAAATGATCTATCATGTCAAACCACTTGA 888 0.4178 MAMAPSTSTNGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKSGTAAHVPPPRPKRKATHPYPQKASKNVLVPLPASMAYVSCSTNTLAHGFATWDENSILMNTGSNKSMSCQDELTNLHGNEGMHISFCRSDIGSKGIIRIGNSSLNGVGNSARKLPASEMPKQRKQIPVLHGLPDFAEVYSFIGSVFDPDTKDHVHKLQEMDPINFETALLLMKNLTVNLSSPDFEPVGKALSVYDVNTKTVGATAGIDAKKQTNDLSCQTT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00028 295 CDD SANT 28 68 IPR001005 -
Sebi1g00028 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 72 IPR017930 -
Sebi1g00028 295 SMART sant 25 70 IPR001005 -
Sebi1g00028 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 70 IPR006447 GO:0003677
Sebi1g00028 295 Pfam Myb-like DNA-binding domain 26 68 IPR001005 -
Sebi1g00028 295 ProSiteProfiles Myb-like domain profile. 21 68 IPR001005 -
Sebi1g00028 295 Gene3D - 29 73 - -
Sebi1g00028 295 MobiDBLite consensus disorder prediction 1 16 - -
Sebi1g00028 295 PANTHER SWI/SNF COMPLEX-RELATED 12 254 - -
Sebi1g00028 295 SUPERFAMILY Homeodomain-like 20 73 IPR009057 -
Sebi1g00028 295 MobiDBLite consensus disorder prediction 1 30 - -
Sebi1g00028 295 MobiDBLite consensus disorder prediction 74 94 - -
Sebi1g00028 295 FunFam protein REVEILLE 6 isoform X1 28 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00028 Sebi-Chr1 388558 392039 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi1g00028 Myb_DNA-binding 9.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00028 - - gmx:100783482 473.011