Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00024 ATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGAAGTCACGAGAGCGGCGAGCACAGCCCTCGTTCTAACATCCGTGAGCAGGACAGGTTCCTTCCCATCGCCAACATCAGTCGCATCATGAAGAAGGCCCTCCCTGCCAATGGAAAAATCGCCAAGGATGCCAAAGAGACCGTTCAAGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGTATGTTTATTTTCTCCTCTGGCTTCTTCCTTTCCCTCCTCGTTCGTTCCGTGCGTTGACCGTTGAATCGTGCAGGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAAACCATTAACGGCGACGATTTGCTCTGGGCGATGGCCACTCTTGGTTTCGAGGATTATATTGATCCTCTTAAGATTTACCTCAGCAGATACAGAGAGGGTGATACCAAGGGTTCTGCCAAGGGTGGAGACTCATCTGCCAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAGTGTGAATTACACAAATTCTCAGGTAACTCTACTATCTTTCTCTTATGCGATATATCCTTTCTTCATGTGCTTCTGGATATTGAATGTTAAGTAA 618 0.4854 MADGPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYVYFLLWLLPFPPRSFRALTVESCRASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDTKGSAKGGDSSAKKDVQPSPNAQLAHQGSFSQSVNYTNSQVTLLSFSYAIYPFFMCFWILNVK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00024 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi1g00024 205 Gene3D Histone, subunit A 17 181 IPR009072 GO:0046982
Sebi1g00024 205 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Sebi1g00024 205 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Sebi1g00024 205 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Sebi1g00024 205 SUPERFAMILY Histone-fold 21 72 IPR009072 GO:0046982
Sebi1g00024 205 MobiDBLite consensus disorder prediction 144 166 - -
Sebi1g00024 205 SUPERFAMILY Histone-fold 97 153 IPR009072 GO:0046982
Sebi1g00024 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 72 IPR003958 -
Sebi1g00024 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00024 Sebi-Chr1 337461 338572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00024 1 175 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.935 3.91e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi1g00024 CBFD_NFYB_HMF 4.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00024 K08065 - gmx:100798667 267.314