Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00023 ATGCACAGAACTCCAGAAGAGACGGAGCAGAGGATCCGACATGGATTCGGATCCTTCTCCATGGACCTATTAGAGTTACTGGACATTTACTTTCCTCAGCAACTGTTCACCGTCGAAGAAAACTGGCTTAATCTCACAACCGCTCTTCTTTCCTTCTTTTCTTCTCCGCCGGGCCTAAACGTCGCTTCTCAGGTGAAAAATGATTACGGAAACTATGTTTTATCACTTGACTTTGAGCAATTCAAAAAAATGTGTCATATTGAGGAATTTTATGAAATGTTAATGGAGAAACCTAAAATTGCCCTCTTATGCATGAGTGCTGCCGTTCACAAGGTTTTGCTTTCCAAATGGGACATTGACAAGCTGGAGCTTGGTGCAAAAGTAGATATCCGTCTTCATAACTGTCCTGAAACTATGATTGCACTGAAGAACTTAAAAGCAGCTTACATTGACAAACTTGTCTCAGTGCGAGGCACTGCTGTGAAAGTCAGCACTGTCAGGCCTCTTGTGGTAGAAATGAGTTTCGAATGCAGTAAGTGTAAACAAACAATTACGCGTATATTTCCTGATGGAAAATTTTCACCGCCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCATTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGATCATGAAGAAGGACGGGTGCCTCGAACAGTAGAATGTGAGCTTACCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATCAGGGGAATTAACACTTACATGGATATTGGAGGAGGCAAGTCAAAGAACAGAAACCAGGGATTTTACTATCTATATCTTGAAGCTATATCCGTAAAAAATTCTAAGTCACAGTCCATACCTGAGGATTCACAAGACTCTAATCCAAAAGCTAGACCGACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCAGAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCATCCATCTACGGGCATGAACTTGTTAAAGCTGGGATAACACTGGCATTATTTGGTGGTGTAAGAAAGCATTCTATGGATCAAAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATCGTTGGCGATCCTGGTCTAGGTAAGAGCCAGCTGCTACAAGCAGCAGCAGCTGTTTCTCCACGCGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAATGACTACGCTTTTGAGGCTGGTGCTATGGTGCTGGCTGATAGTGGATTGTGCTGTATTGATGAGTTCGATAAAATGTCATCAGAGCATCAGGCTTTACTAGAGGCAATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGGCTAGTAGCAAGTTTATCATCCCGGACATCTGTCTTAGCGGCTGCAAACCCCGTCGGTGGTCATTATAACCGGGCAAAAACTGTAAACGAAAATTTGAAAATGAGTGCAGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAGCGAGTCTCGGAGCACATCATGTCACTTCATGCTGCGCATGGACAACATTCGCCGGCATTGAAAAAGCGACGTGGAGATCCACCTTCTGATTCAAGAGCTGCTGAATCACAGAATGCTGAAGGTGTAGATTTGAGTGTTAGATCTGGTTCTTTAATTTCAAGGTTGAGACTTGACCCACAGAGAGACCGGGATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTACTTATGCAAGAAGTTTTGTCTCTCCTAGGATGTCCAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTAAGAGACCATAATACTTCGGCTGATGGTACTCCTATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGAGCTCGGCTGGACTTGAGAGCAGAAATAACGGCCCAGGATGCAATGGATGTTGTCGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAGCAGAAAGAGGCAAAACGCTTTCTAAATGCCCTTAACAAGCAATCGGAACTGGAACAGAAAGATTACTTTTCCATATCGGAAATATACAATCTGGCGGATAGGATTTCCTTGAAAGTCCCTGATATTGACACTTTCATCGATAATTTAAACAGCGTTGGTTATCTACTAAAAAAAGGACCAAAGACATACCAGGTGTGA 2373 0.4227 MHRTPEETEQRIRHGFGSFSMDLLELLDIYFPQQLFTVEENWLNLTTALLSFFSSPPGLNVASQVKNDYGNYVLSLDFEQFKKMCHIEEFYEMLMEKPKIALLCMSAAVHKVLLSKWDIDKLELGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQTITRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAISVKNSKSQSIPEDSQDSNPKARPTELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHAAHGQHSPALKKRRGDPPSDSRAAESQNAEGVDLSVRSGSLISRLRLDPQRDRDFVPLPGQLLRKYITYARSFVSPRMSKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRAEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDYFSISEIYNLADRISLKVPDIDTFIDNLNSVGYLLKKGPKTYQV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00023 790 Coils Coil 463 483 - -
Sebi1g00023 790 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 Gene3D - 142 271 IPR012340 -
Sebi1g00023 790 MobiDBLite consensus disorder prediction 561 590 - -
Sebi1g00023 790 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 71 742 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 Pfam MCM OB domain 142 270 IPR033762 -
Sebi1g00023 790 Pfam MCM P-loop domain 346 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 Pfam MCM AAA-lid domain 621 704 IPR041562 -
Sebi1g00023 790 Gene3D - 326 714 IPR027417 -
Sebi1g00023 790 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Sebi1g00023 790 SMART AAA_5 392 544 IPR003593 GO:0016887
Sebi1g00023 790 CDD MCM8_WHD 726 790 - -
Sebi1g00023 790 SUPERFAMILY Nucleic acid-binding proteins 69 272 IPR012340 -
Sebi1g00023 790 Gene3D - 169 219 - -
Sebi1g00023 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 710 IPR027417 -
Sebi1g00023 790 SMART mcm 138 705 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi1g00023 790 CDD MCM8 352 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00023 Sebi-Chr1 322938 330119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00023 20 790 Core DNA Replication Machinery Family AT3G09660 73.092 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00023 K10737 - gmx:100784549 1363.59