Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00017 ATGAGGAAAAAAGATGGCGACAGTAACAGCAATTCGGTGAAGATTTTGAGTGCGGCTGAAGATGAAAGCGAGAAAACAAGAGAATCTATCGAAGTGAGAACACCGTCTGCGAAGAAGAAGAGGAAGCGCAAGGGAACCTCTTCAGAACCGGTTGAAGGATTCAGTGTGTTCAGAAATTCGACATCCACAACACAGTCCAAGTCGAACGGTGAAGTCCAAGCTGATGATGATGATGAGTCCGTAAAGCTGAAGAAAGAACAAAATAGACAACTTGAGCGGGATGCCATCATCAGAAAGAAGCATAGCATTCATGTCTCTGGTTATAATGTTCCATCCCCGCTGCAAAACTTTGAAGAGTTGGGATCAAGATATAAATGTAAGTCATATATATTGCGGAATCTGGCTGAACTTGGATTCAGAGAACCAACACCAATCCAAAGGCAGGCTATTCCTGTACTTTTACAGGGTCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGAAAAACCTTTGCATTTGTGTGTCCCATGCTTATGAGGCTTAAGGATCCTTCAAAAGATGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTACCCAAACATTTCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAAATTTCATATCAAGTTAATGACTAAACAGCTTTTAAGAAATGCTGATTTTTCAAAATTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCTTGGCTATCCGGAGGAAAAAAGTTGATCTCAGCAGAGTTGAGTATCTTGTCTTGGATGAATCTGATAAGCTATTTGAGCCTGAATTGTTCAAGCAGATTGATTCTGTTATGAAAGCATGCTCGAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAACATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGCGAAGAAGGAAAACTTATGGCAATTCGTCAAAGCTTTGCAGAGAGTCTTAATCCTCCAGTATTAGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAATTTCAGAATGGGTAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGACTTCAAAGGTGTGAACTGTGTGGTCAATTATGATTTCCCAGATTCTGCTGCTGCATATATCCATAGAATAGGTCGTTCTGGCAGAGCAGGGAGAACTGGAGAAGCGATTACATTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTAGCTAATCTTATGGCAGCGTCAGGCTGTGAGGTTCCATCCTGGCTAAAGGAGTTGCGCAAAAGGAAGTGGAAGAAACACCGGCCTAAAAGAGATTCAATCACAACCAAACCAGATGTATAA 1539 0.4191 MRKKDGDSNSNSVKILSAAEDESEKTRESIEVRTPSAKKKRKRKGTSSEPVEGFSVFRNSTSTTQSKSNGEVQADDDDESVKLKKEQNRQLERDAIIRKKHSIHVSGYNVPSPLQNFEELGSRYKCKSYILRNLAELGFREPTPIQRQAIPVLLQGRECFACAPTGSGKTFAFVCPMLMRLKDPSKDGIRAVILCHTRELSTQTFRECKKLAKGKKFHIKLMTKQLLRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEYLVLDESDKLFEPELFKQIDSVMKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRMGKTWVLIATDVVARGMDFKGVNCVVNYDFPDSAAAYIHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLKELRKRKWKKHRPKRDSITTKPDV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00017 512 CDD DEADc_DDX52 130 323 IPR044764 GO:0003724|GO:0005524|GO:0030490
Sebi1g00017 512 MobiDBLite consensus disorder prediction 52 70 - -
Sebi1g00017 512 MobiDBLite consensus disorder prediction 18 35 - -
Sebi1g00017 512 Pfam DEAD/DEAH box helicase 143 307 IPR011545 GO:0003676|GO:0005524
Sebi1g00017 512 Pfam Helicase conserved C-terminal domain 355 453 IPR001650 -
Sebi1g00017 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 320 IPR014001 -
Sebi1g00017 512 MobiDBLite consensus disorder prediction 71 87 - -
Sebi1g00017 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 465 IPR027417 -
Sebi1g00017 512 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Sebi1g00017 512 SMART ultradead3 138 335 IPR014001 -
Sebi1g00017 512 SMART helicmild6 372 453 IPR001650 -
Sebi1g00017 512 Gene3D - 59 319 IPR027417 -
Sebi1g00017 512 MobiDBLite consensus disorder prediction 1 87 - -
Sebi1g00017 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 492 IPR001650 -
Sebi1g00017 512 Gene3D - 320 496 IPR027417 -
Sebi1g00017 512 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 66 499 - -
Sebi1g00017 512 CDD SF2_C_DEAD 332 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00017 Sebi-Chr1 233809 238029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00017 113 491 Eukaryotic Initiation Factors Gene Family AT3G19760 32.021 1.27e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00017 K14779 - gmx:100800969 843.958