Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00013 ATGCATACTGATCAACATTATGTGAACCTTGGTAGGAATAGCACTTCAGAGAATGGTTCTTTTATTTATCCAGTGGAAAATATGGCTATAGATAACATATCTTTCCCTTCTCATTGGAACTCCACCACAAGGTCAAGCGGATATGCATCCTCAAGTCTCAACATTGAAGTGCCTCCTCATCAATCAGATGCATCAGGCACTTCTAATGATCATTTTATGCATTCATCTAGTGCTGGAGCGTTTTTTGCAGTGTCTGAAAATTATGTACACCAGCCTTCTTCATCTAATTATGACAGACAAGCATTCCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGGCCTCACAAGCGGAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTACAAGCAGATATTTCAGTGCTGGGAGTTCAACTGATCTTCCCATGTCTTCAGAATCACGGCCAGAGAAGCCAAATGTGGATTCTCAATATATGCCTTGGGATCATGTTACTATGGCACCCACATTCAGAGGTGCTAGCCTCTCAATAAAGGGTGAGAGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACTCTGCTGTCCCACCAGTTGACCATTCAAGCATGGTGGATCTTTCTGGTCAGATTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTGTTATTACCAGATACTAGTGCTTTTGGTTTTGAGACAAATCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGTAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATATGGTACAAACAGAAATCCTACTGCTCCTCAAAGTTTTCATAATCCGACTCAGACCACTAGGGGAATTCGAAGTAACTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACACCTTCAGATGATGGATTACCTATGGTAGCTGAAAGTTACAATTCTAGACACCCGAGGTCGTTGGCTACCATTGGCTGGAGGAATGGTGATAGAAATGGGAGGTCCAGAGTTTCTAGTGAGAGATATCGATCATTGGCTGATGAGGCTAGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGATTGTTGAGCGCGCTTCACTGTATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCCATGTGAACACAGGAATGTCTGAGGATTTGATTTCCAAGTGTCTGACAGAAACAATATATTGTTCATCCGAGCAAAGTCAAGACGAAGGAAGCTGTGTAGTCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTAAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1581 0.4282 MHTDQHYVNLGRNSTSENGSFIYPVENMAIDNISFPSHWNSTTRSSGYASSSLNIEVPPHQSDASGTSNDHFMHSSSAGAFFAVSENYVHQPSSSNYDRQAFHVDGGFIDLTMGSGRGPHKRKSPGIPSVYERGSTSRYFSAGSSTDLPMSSESRPEKPNVDSQYMPWDHVTMAPTFRGASLSIKGESSLRNVRSRSALDLESNLARTHLSSNHSHNSYSAVPPVDHSSMVDLSGQISTSLTRDWSQMNISPANGRVLLPDTSAFGFETNHFLVGSGATASNASVDVGGFHHEYGTNRNPTAPQSFHNPTQTTRGIRSNYSQRSTPTFRASSSLRLGHVTPSDDGLPMVAESYNSRHPRSLATIGWRNGDRNGRSRVSSERYRSLADEASLHDRFSSEGFMIVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGMSEDLISKCLTETIYCSSEQSQDEGSCVVCLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKVCPICKASALPEDKKDK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00013 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 519 IPR013083 -
Sebi1g00013 526 Pfam Ring finger domain 472 515 IPR001841 -
Sebi1g00013 526 CDD RING-H2_RNF24-like 473 518 - -
Sebi1g00013 526 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 438 519 - -
Sebi1g00013 526 SMART ring_2 473 514 IPR001841 -
Sebi1g00013 526 ProSiteProfiles Zinc finger RING-type profile. 473 515 IPR001841 -
Sebi1g00013 526 MobiDBLite consensus disorder prediction 297 324 - -
Sebi1g00013 526 SUPERFAMILY RING/U-box 463 519 - -
Sebi1g00013 526 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 86 519 IPR045191 GO:0061630
Sebi1g00013 526 MobiDBLite consensus disorder prediction 130 159 - -
Sebi1g00013 526 MobiDBLite consensus disorder prediction 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00013 Sebi-Chr1 176854 179127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00013 2 525 C3H Transcription Factor Family AT2G37150 43.421 7.51e-113 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00013 - - gmx:100803627 922.539