Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi1g00012 | ATGAGTGTCATCGACATTCTTACCAGAGTTGATTCCATTTGTAAGAAGTATGACAAATACGACGTCGATAAGCAAAAGGATTCCAATCTCGCCGGCGATGATGCATTCGCCAAACTCTACGCCGTCGTTGACGCCGACATTGAGGCCGCGCTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACAAAAGCTAGGTTGCTGGATGAGGTTCCCAAGTTGCAGAGGTTGGCTGTAAAAAAGGTAAAGGGGCTTTCATCACAAGAATTTGCAGCCCGTAATGATTTGGTTCTTGCATTGCCAGAGAGGATCCAAGCTATCCCAGATGGGACCCCTGCTGTGCCCAAACAATCTGGAGGTTGGGGATGGGGAGCTTCTGCTTCACGTCCTGAAATTAAATTTGATTCAGATGGGCGATTTGACGATGAATGCTTCCAACAAACAGAAGAATCAAGTCAATTCAGACAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATCGCAGAAGGGTTGGATACTTTGAAAAACATGGCACACGATATGAATGAGGAACTGGATAGACAAGTTCCATTGATGGATGAGATTGATACTAAGGTGGATAAGGCATCCTCTGACCTTAAGAATACCAATGTTAGACTTAAAGATACAGTGACCCAGGTTATTTAA | 720 | 0.4444 | MSVIDILTRVDSICKKYDKYDVDKQKDSNLAGDDAFAKLYAVVDADIEAALQKAETASKEKGKASAVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAVPKQSGGWGWGASASRPEIKFDSDGRFDDECFQQTEESSQFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVTQVI | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi1g00012 | 239 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 172 | 234 | IPR000727 | - | |
| Sebi1g00012 | 239 | SMART | tSNARE_6 | 167 | 234 | IPR000727 | - | |
| Sebi1g00012 | 239 | FunFam | Putative syntaxin-71-like | 172 | 233 | - | - | |
| Sebi1g00012 | 239 | CDD | SNARE_Qc | 177 | 232 | - | - | |
| Sebi1g00012 | 239 | PANTHER | SYNTAXIN | 46 | 234 | IPR045242 | - | |
| Sebi1g00012 | 239 | SUPERFAMILY | SNARE fusion complex | 165 | 232 | - | - | |
| Sebi1g00012 | 239 | ProSitePatterns | Syntaxin / epimorphin family signature. | 178 | 217 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Sebi1g00012 | 239 | Gene3D | - | 172 | 233 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi1g00012 | Sebi-Chr1 | 151767 | 153639 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi1g00012 | 1 | 238 | SNARE and Associated Proteins | AT3G09740 | 75.210 | 3.10e-135 | 379 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi1g00012 | K08506 | - | gmx:100819272 | 405.601 |