Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00011 ATGGACAAAGATCCTAATTCAGAAATCCAACTCCCCCCTGGATTTAGATTCCACCCTTCTGATGAGGAGCTTATTGTTCACTATCTAAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTTTGGTGAGGATGAATGGTATTTCTTTACACCTAGGGACAGGAAGTATCCTAATGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGTTATTGGAAGGCTACTGGGACTGACAAACCTATTCTTACTTCATGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTTTACAAGGGACGTCCACCAAAAGGATCTAAATCTGATTGGATCATGCATGAGTATAGGTTGCATGATACAATGATCTCTATTTCCAAACAAAGAGGGTCTATGAGATTGGATGAGTGGGTGTTATGCAGAGTTCGACAGAAAGTTAGCAGCCCAAGAAGTAATTGGGAAGATTCAAATGAAGTTAGTTATGAACCAACAAGCCAAATTCAACAAATGAATGAGAACTCTAATCCTGAACCAGTGAAAAACTCTGTGCAGAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTACTCTGCCTAATTCAATTGGTATGGCCTCATGCTCAGGCTTTCATTGTAATGATGACATAAAAGCATATTCATTGCATGAAGACAACTTAGACATACTAGGAGCTCAGTTCTTAGCATCTGCATCAGAGGGCTTGTTTAATCCACTGAAGAGAAAAGCAATTGAAGAAAATAGCTTGGATTTTTATGCTCCCACCAATCAAAAGCTAAGCAGAGAAGTTGATGATGGGAATCAAAGGGTTGAGATAGAAGACATAGGAATGTACATAGCTGAAAATGGGGTATTGTGCTACACTTAG 951 0.3975 MDKDPNSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKSDWIMHEYRLHDTMISISKQRGSMRLDEWVLCRVRQKVSSPRSNWEDSNEVSYEPTSQIQQMNENSNPEPVKNSVQNEYPMLPYILASKSTLPNSIGMASCSGFHCNDDIKAYSLHEDNLDILGAQFLASASEGLFNPLKRKAIEENSLDFYAPTNQKLSREVDDGNQRVEIEDIGMYIAENGVLCYT 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00011 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 212 - -
Sebi1g00011 316 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Sebi1g00011 316 MobiDBLite consensus disorder prediction 170 200 - -
Sebi1g00011 316 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Sebi1g00011 316 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Sebi1g00011 316 FunFam NAC transcription factor 20 168 - -
Sebi1g00011 316 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00011 Sebi-Chr1 147807 149239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00011 6 165 NAC Transcription Factor Family AT1G69490 70.000 4.21e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi1g00011 NAM 9.2e-39 No_clan