Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00010 ATGCAAATGATGCCCGGTGACCCCTTTTCCATTGGAGGAACAACTTCCAAAGAGCAAAACACAAACCCTAACCCTAATCCCCCTCCACCTTCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCAAAGACTCTCATGGCCACCAACCGTTTCATCTGTGAGATATGCAACAAAGGTTTCCAGAGGGATCAGAACCTTCAACTTCACCAGAAGAGGACACAACCTTCCATGGAAGCTGCGGCACTCGGCGACCTCACCGGAATAAAGAAGCATTATAGTAGAAAACATGGAGAGAAGAAGTGGAAGTGTGAGAAATGTTCCAAGAAATATGCAGTACAATCTGATTGGAAAGCTCACACCAAAACTTGTGGCACTAGAGAATATAAGTGTGATTGTGGCACCCTCTTCTCCAGGAAGGACAGTTTTATTACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAGAGTGCTAGACTTACTTCAGTTGCTACCACCAATACTCTAAATTTTAAGAATGAAGAGGCAAGTTTGATGAACACACAAATGACACAAGCTAATAATGCTTTAATTGGTTCTTCTTCTAATTTTGGAATGTCTGCTTCCAATTCATGTACCTTACCATTGGGGAAAAAAGCAGAATGTGGAACTTATTCAGAACATTTATCAGCTTCTCCAATGTCAGCTACTGCCCTTCTGCAGAAAGCAGCACAAATGGGTTCAACAAGAAGTGACAATAACTCTTCCATTTTCAGTGGCAGTTTTGGAGTAATGACCTCATCATCTTCCACTACCAATGCTAATAACCAAAACTGTGAAGAGCTTAACCGTGCATTTCAGAATATGAACCAACCACAGAATTTTAATCCAACTACTAGCTTTGGTTCATTTCCACATAATTCATCACATGGTTTTGATCATCCAATGAAGTTTCATCATGGTTCAAATAGAGTGGAACATAATAATAACTTGACAAGAGATTTCTTGGTATGA 1020 0.4059 MQMMPGDPFSIGGTTSKEQNTNPNPNPPPPSKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHQKRTQPSMEAAALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATTNTLNFKNEEASLMNTQMTQANNALIGSSSNFGMSASNSCTLPLGKKAECGTYSEHLSASPMSATALLQKAAQMGSTRSDNNSSIFSGSFGVMTSSSSTTNANNQNCEELNRAFQNMNQPQNFNPTTSFGSFPHNSSHGFDHPMKFHHGSNRVEHNNNLTRDFLV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00010 339 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 90 338 IPR031140 -
Sebi1g00010 339 SUPERFAMILY beta-beta-alpha zinc fingers 60 131 IPR036236 -
Sebi1g00010 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 89 IPR013087 -
Sebi1g00010 339 MobiDBLite consensus disorder prediction 1 45 - -
Sebi1g00010 339 Gene3D Classic Zinc Finger 89 159 - -
Sebi1g00010 339 MobiDBLite consensus disorder prediction 22 36 - -
Sebi1g00010 339 FunFam protein indeterminate-domain 5, chloroplastic-like 89 168 - -
Sebi1g00010 339 Gene3D Classic Zinc Finger 57 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00010 Sebi-Chr1 131039 132814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00010 234 273 IDZ Gene Family AT5G03150 69.048 1.97e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1g00010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00010 K25870 - tpra:123892932 343.199