Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00005 ATGGCAACTGAAGCACAAGCCTTTCCCAACAACAACAACAATAATAATGACCAAGGCACTCATAACTCAATTCAAGAGGATGTAGAGTCATCTGAAATAACTGAAGTCCCTAGTAGACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCTCAAGAACACTGGATGAAGCAAGAGAGGATTTTTTGGGAACAAACAAGCCTCCAACTCCACCTCCCAGAAGACTGAATTTTTACCCCTCTACAAGCCCTCATTTATCCGGAATCAATGAGTTCCATGGTTCTTCATCTACAAAAAATAAATCAACTATTAAAACACCTACTCCCAAACCCAATTTTAAATTCCACAACATGAGTTCAGATATTGAAACTTCCACCCTAGCACTTGAAGGTTCACCCCCAGAGCCACCAAAAAAGTCTATGATTTCAAGAACATTATCTTTTACAAAGGTGATCACACCTAGAGGGAAGATTACATCATCCTTACCTATAACCCCAAATGCTCAGTCAAATCTGGAGTCTCAACATGGAGGGAACACTGCCTATCTAGCAACACCTGTTAAAAAAGGACAGCAATTACCAATACATCGTTCTCATTCAGTTCCTGTGTTTACCAAATATGACAACACATCTGCAGGTGGCATGTTTCGTGTTGTTCCTACCACACCACGGTTGGCTGGGAGTATTGCCACAGCATCTGCGAAATCTCCACCTGACGATACTGTTGAAAGTGAGGATGGAGAAGATATCCCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTAGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAATAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTGTCACTCTTTTGCGAGTTCCAGGTTTCAAGCATGGGATCTGGCGCCATTGCTATATCTCTCCCATTTTCTTGTATGCTGGGTCTTCTTGCAAGCATGACAACCACAACAATGGGTAG 1056 0.4223 MATEAQAFPNNNNNNNDQGTHNSIQEDVESSEITEVPSRQHGRRKNLILEIPSRTLDEAREDFLGTNKPPTPPPRRLNFYPSTSPHLSGINEFHGSSSTKNKSTIKTPTPKPNFKFHNMSSDIETSTLALEGSPPEPPKKSMISRTLSFTKVITPRGKITSSLPITPNAQSNLESQHGGNTAYLATPVKKGQQLPIHRSHSVPVFTKYDNTSAGGMFRVVPTTPRLAGSIATASAKSPPDDTVESEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVPGFKHGIWRHCYISPIFLYAGSSCKHDNHNNG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00005 351 MobiDBLite consensus disorder prediction 1 53 - -
Sebi1g00005 351 ProSiteProfiles Zinc finger RING-CH-type profile. 250 312 IPR011016 GO:0008270
Sebi1g00005 351 PANTHER OS02G0165000 PROTEIN 9 320 - -
Sebi1g00005 351 MobiDBLite consensus disorder prediction 1 31 - -
Sebi1g00005 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 313 IPR013083 -
Sebi1g00005 351 Pfam RING-variant domain 258 305 IPR011016 GO:0008270
Sebi1g00005 351 CDD RING_CH-C4HC3_MARCH 258 306 - -
Sebi1g00005 351 MobiDBLite consensus disorder prediction 32 53 - -
Sebi1g00005 351 SUPERFAMILY RING/U-box 254 309 - -
Sebi1g00005 351 SMART ringv_2 257 306 IPR011016 GO:0008270
Sebi1g00005 351 MobiDBLite consensus disorder prediction 93 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00005 Sebi-Chr1 61572 65792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00005 171 312 C3H Transcription Factor Family AT2G37950 28.276 3.27e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00005 - - gmx:100783117 402.134