Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1g00002 ATGAAGATCCTCTGTTCTTTTTCTAGTTGTTTCTCAGGCTCGGTTGAAGAACAAACCAAGCACGACAAGCCAGAGGAAGATCATGATGGAAGCTTTCGCATATTCACTTATAACGAATTGAAATCTGCCACCCGTGGTTTTCATCACTCGGAAAAAATTGGAGAAGGAGGCTTTGGTTCTGTCTACAAGGGGAGGCTTTTTGATGGAACTCTGGTGGCTGTGAAAGTGCTTTCAATTGAGCTTGAATCCTTGCGAGGAGAGAGAGAATTTGTGGCAGAATTGACTACACTAGCAAGTATCAAGCACCAAAATCTAGTCATTCTTCGAGGCTGTTGTGTAGAAGGAGCTAAGAGATATTTAGTCTATGATTACATGGAGAATAACAGCCTTCGTCACACTTTCTTATGTTCAGAGCAAAACAGGATGAGATTCAGCTGGGAAATACGGAGGGACGTGTGCATAGGTGTGGCGAGGGTGCTTGCCTTTCTCCATGAGGAACTTAAACCTCATATTGTGCATAGGGATATCAAAGCCAGCAATATCCTTCTTGATCGAAATTTGACACCAAAAGTTTCAGACTTTGGTTTGGCAAAGCTACTAAGAGATGAAAAATCCCACATCACCACTCGAGTTGCAGGGACATTTGGTTATCTTGCTCCAGAGTATGCCAGTTCTGGACAGGTGTCACGAAAATCAGATGTTTATAGCTTTGGAGTATTACTCTTAGAAATTGTGAATGGCGAAGCAGTGGTAGATTCTCATCAACCTATGGAACAACGTTTCATAGTAGAAAAGGCTTGGGCAGCGTATGAAGCTAATGATGTTTTGAGAATGGTGGATAAGGTGCTGAATCAGAACTTTCCCGTGGAAGAAGCGAAACGGTTCCTAACGGTGGGGTTGCGTTGCGTGCAAGAAACCGCCAAGCATAGGCCACGTATGTCAGAGGTTGTGGAGATGTTGACCAACAAGATTGAGATGGAAGAGGTTCCTATTTCAAAACCAGGATTTATCAGTGATTTGAGGAGACTGAGAAGAGACGAGAAGCAAACGCATTCATTAGAAGAATCAAGTTTTAGTGGAGCAACCTATGCAAGCTCCATGTGGAGTTCGGCTAATCTTGCCCGTTAG 1128 0.4344 MKILCSFSSCFSGSVEEQTKHDKPEEDHDGSFRIFTYNELKSATRGFHHSEKIGEGGFGSVYKGRLFDGTLVAVKVLSIELESLRGEREFVAELTTLASIKHQNLVILRGCCVEGAKRYLVYDYMENNSLRHTFLCSEQNRMRFSWEIRRDVCIGVARVLAFLHEELKPHIVHRDIKASNILLDRNLTPKVSDFGLAKLLRDEKSHITTRVAGTFGYLAPEYASSGQVSRKSDVYSFGVLLLEIVNGEAVVDSHQPMEQRFIVEKAWAAYEANDVLRMVDKVLNQNFPVEEAKRFLTVGLRCVQETAKHRPRMSEVVEMLTNKIEMEEVPISKPGFISDLRRLRRDEKQTHSLEESSFSGATYASSMWSSANLAR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1g00002 375 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 370 - -
Sebi1g00002 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Sebi1g00002 375 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Sebi1g00002 375 FunFam Serine/threonine-protein kinase receptor 16 124 - -
Sebi1g00002 375 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Sebi1g00002 375 CDD STKc_IRAK 53 322 - -
Sebi1g00002 375 SMART serkin_6 47 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1g00002 375 Pfam Protein kinase domain 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1g00002 375 SUPERFAMILY Protein kinase-like (PK-like) 29 337 IPR011009 -
Sebi1g00002 375 Gene3D Transferase(Phosphotransferase) domain 1 125 333 - -
Sebi1g00002 375 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1g00002 375 Gene3D Phosphorylase Kinase; domain 1 16 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1g00002 Sebi-Chr1 19275 20957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1g00002 35 339 Receptor kinase-like Gene Family AT1G56120 49.508 3.89e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1g00002 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1g00002 - - gmx:100813945 528.094