Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi19g00067 ATGGTTTTGGCAACCGACTTCATTGCTGACATTGACTCATCCAAAGAATCGTGGCATATTGTTGCAAGAGTAGTTCGTTTGTGGAAAATTCCCAATTTCCACAATGCAAAAATCCCCCTTGCTTTGGAGATGGTTCTTTGTGATGAGAGGGGTGGAAAAATTCACACTGTTGTCCGAAGAACTCTGGTGTACAAATTTCAATCCACCCTAATTGAGGGAGCTGCTTATTCCATTTCAAATTTTGGTGTTGGTGAAAATTCTGGTGAGTTCAAGTATTCTATGCATTTGTACAAGGTGAACTTTGAGTACCATACAAGAGTTGTTTTGATTAGGGATTGCACTATTCCCCGATTTCAATTTTCATTTGTGTCTTTGGCGGATGTAATGGCACCTTCTTTTGACAACAGTTATTTAGTCGATGTAATCGGAGTGTTGACTGGTATTGGTACTGAGAAGGAGTCGAAAATAGAATGTGCTCTGTTTGAAAATTACCTTGATGATTTGAATGCATTCCTTGCTTCTGGTAATACTACAAATGTGGTTGTTGTAGTACAACTTGCAAAAGTCAAGTCATTCAAAGGGAAAGTATCTTTGCAAAATTCTCTCCATGCTACTAAGTTGATCTTCAACCCTGACTTTGACAAAGCTGTGGAATTAAGGAAAAGGCTTGAAGAAAACACTGAGTCTGTCTCGCAACCCTTAAGTCAAATTGCTGAAGTTCCTAAGTTGACTATGGAGGAGGAGTTCTTGACTCATACTGTGATGAAGACTATTGAGGAGCTAAAGGACTCTAATGAGGAATGTTGTTGCATTGTCATGGCTACGATCAAACATCTTATTGAAGGAGAAGACTGGTGGTATAAGGCTTGCAGATGTGGGACTTCTGTTTTTTCTGATTCAAAAATGTATTATTGTGGAACATGTAACAAACATATAGTTTCTGTTTTCTATAGGTATCGTCTGAAGGTTTGTGTCATTGATTCAACTGATTCTGCAACATTAGTAATCTTTGATCGAGATGCTGCATCTCTTTTGGACATAAGTTGTTCTGATTTGTTGGAGTCTACTTCCCAGCCCAATGATAAGAGTTTCCCTGCTGAAATATCTACATTGGTTGATCAAACTTTTCTGTTCAAAGTTGAGAATAAGATTGTCTCCAACTCTCGGTTTGAGACATCTTACAAAACTGATGACTCTTTGGACTATGTCATTTCTGATAGCCAATTAGTTGGAGTTGATTTATCTATTGATCTGCCAAAACAGTTATCTCAGACAGTCAATGATGATGGAGATAATACTGTTTTAATGGGATCTGGTGATGGACAAGGACTGACAATGGATTCTGACTCTGTTACTCCATGTAAAAGAAATTCTGCTGAATGTACTGATGATTCAATTGATGCCTCATCATCTGTCAAGTTGAAGAAGGTTATCAAACAAGAGAAAGAGTGA 1452 0.3795 MVLATDFIADIDSSKESWHIVARVVRLWKIPNFHNAKIPLALEMVLCDERGGKIHTVVRRTLVYKFQSTLIEGAAYSISNFGVGENSGEFKYSMHLYKVNFEYHTRVVLIRDCTIPRFQFSFVSLADVMAPSFDNSYLVDVIGVLTGIGTEKESKIECALFENYLDDLNAFLASGNTTNVVVVVQLAKVKSFKGKVSLQNSLHATKLIFNPDFDKAVELRKRLEENTESVSQPLSQIAEVPKLTMEEEFLTHTVMKTIEELKDSNEECCCIVMATIKHLIEGEDWWYKACRCGTSVFSDSKMYYCGTCNKHIVSVFYRYRLKVCVIDSTDSATLVIFDRDAASLLDISCSDLLESTSQPNDKSFPAEISTLVDQTFLFKVENKIVSNSRFETSYKTDDSLDYVISDSQLVGVDLSIDLPKQLSQTVNDDGDNTVLMGSGDGQGLTMDSDSVTPCKRNSAECTDDSIDASSSVKLKKVIKQEKE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi19g00067 483 Gene3D - 114 232 IPR012340 -
Sebi19g00067 483 CDD RPA1_DBD_C 258 383 IPR047192 -
Sebi19g00067 483 Pfam Replication factor-A C terminal domain 272 383 IPR013955 -
Sebi19g00067 483 SUPERFAMILY Nucleic acid-binding proteins 255 380 IPR012340 -
Sebi19g00067 483 Gene3D - 246 409 IPR012340 -
Sebi19g00067 483 MobiDBLite consensus disorder prediction 438 463 - -
Sebi19g00067 483 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Sebi19g00067 483 Pfam Domain of unknown function DUF223 43 109 IPR003871 -
Sebi19g00067 483 MobiDBLite consensus disorder prediction 443 463 - -
Sebi19g00067 483 CDD RPA1_DBD_A_like 20 107 - -
Sebi19g00067 483 PANTHER OS03G0429900 PROTEIN 8 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi19g00067 483 SUPERFAMILY Nucleic acid-binding proteins 119 228 IPR012340 -
Sebi19g00067 483 Gene3D - 7 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi19g00067 Sebi-Chr19 3087235 3089744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi19g00067 18 451 Core DNA Replication Machinery Family AT4G19130 23.444 7.55e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi19g00067 - - vun:114187234 367.081