Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi19g00066 ATGTCAAGCCGTAGAAGAAAGATGAAGATATTTGGAATATCTTGTGGTGACCCTAAGGAAGAAATAGATGATAAAGAGAATCAAAACAAGGAAGACGGTAGCCAATACAGCCTAACGGGTATCCTTCTTCCTTCTCTCGGTGCCACCGCCGCACGAGAAAGTCGGAGACCTAAACTCTGTCGTTTCATTATCTCCCCATCCAACCATCACTACAAACTATGGCAGAAGTTTCTGGTGGTATTGGTTTTCTACACTGCATGGGTGTGTCCTTTTGAATTTGGATTCCTTGAGAATTCGAAAGGTGCACTCGCTATAACTGACAACATTGTGAACGCGCTTTTTCTCGTTGACATTGTTCTCACCTTCTTCGTTGCCTACCTTGACAAATATTCTTATGTGCTCATCGACAATCGAAAGCTCATTGCTTGGAGATACGCTAAATCTTGGTTAATCTTGGATGTTATCGCTAGCATCCCTTATGAAGTTGTTCACAGCGTGTTGCCACCTTCTCTTCGAACATATGGCTACCTTAGTATTCTCCGCCTCTGGCGCCTCCATAAAGTTAGTGCTATGTTTGCAAGACATGATCCAAAATCTACATGGCTTGGACTTGTCCCTGATGCCGCTAATCAAAGTCTATTGGGCCGCTATGTAACATCAGTATATTGGTCCATAGTGACTCTTTCATCTGTTGGTTATGGTGATCTGCATCCTATAGAACTAAAAGATATAACTGATATAGAAGGACTGCAGCAACAAGAGATCATTGACTCCCTTCCAAAAGCCATTCAATCTAGCATCTCACACTATCTATTCTATTCTCTTGTTGACAAAGTCATGGAGATGAAGGCCGAGTATTTTCCTCCAAAGGAAGACGTGATTTTACAGAATGAAGCACCAACAGACTTTTATATATTGGTTACCGGAGCTGTTGTTGTTGGTGAGGCAAAGACAGGAGATGTTGTTGGGGAAATAGGAGTGTTATGTTACAGGCCACAACCATTTACAGTTCGGACTAAGCGATTGTGCCAACTTCTACGTTTGAATCGAACAACATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGAACAATAATCACCAACAATTTTCTTCAGCATTTAAATGAATCAAAGGATCCAATGATGGAAGGAATCCTGGCTGAAACAGAGGCAATGGTTGCTCGAGGAAAAATGGATTTGCCTGTCAGTTTATTATTTGCAGCTAGTAGAGGAGATGATATATTATTGCATCAATTGTTGAAGAAGGGTTCAGATCCAAATGAAACGGATAAGAATAATGGAAAGACAGCGCTGCATATTGCAGCTTCTATTGGCAATGAACATTGTGTAGTTCTACTTCTGGAATACGGGGCTAATCCCAACATCCAAGATTTAAATGGAAGTGTCCCACTATGGGAAGCAATGGTGGGTAGGTATGAATCGATCATGAAACTTCTCAAAGACAATGGTACAGATATATCATCTGCTGATGTAGGCCATTTTGCATGCATTGCTGTTGAGAAAAATGACATAAAATTGTTGAAGGACATTGTTCAATATGGTGGGGATGTGACACAATCTACAAGGAACGGAACCACTGCACTTCATGCTGCAGTATGTGAAGGAAACGTTGAAATAGTTAAGTTCCTTCTAGATCAAGGAGCTAACATTGATAAACAAGATGATAATGGATGGACTCCAAGGGCATTTGCAGATCATCAATGCCATGAAGAAATACAAAATATATTCCAAGGACTTGGACGAAACAAAAAATCATCTGTTATTCCTCCGATACCAAAGAATGAAGCGTCCTTTGTTGGAAAATGTCAAAGTGAACCCTTTATGCCAGGCATTCCCCAAGGAAGCATGCCACCTAATCAAAAGTTGACATGGTTTGATAATCATCAAAGAAGAAGGGCTAGCCCTTTTCATAATTCCTTTTTTGGGATGATGTCAGCTGCTAATCATGATTACCTTCCATCTCAAAGTGATTGCTCTACTATGACAAGTGTGAATGAATTATCAGCTAGAGTAACACTTAGTTGTCCAGAAAAAGGTGAACATGCAAAAAAGCTTGTTTTTCTACCAAAGTCCCTTCAAGAACTGTTACACCTTGGTGCCAAAAAGTTTGACTTCTCTCCCACCAAAATTTTGACCAAAGAAGGAGCTGAAGTTGATGACATAAATGTAATAAGAGACGGTGATTATCTTATTCTTGCACGGGACTAA 2232 0.4019 MSSRRRKMKIFGISCGDPKEEIDDKENQNKEDGSQYSLTGILLPSLGATAARESRRPKLCRFIISPSNHHYKLWQKFLVVLVFYTAWVCPFEFGFLENSKGALAITDNIVNALFLVDIVLTFFVAYLDKYSYVLIDNRKLIAWRYAKSWLILDVIASIPYEVVHSVLPPSLRTYGYLSILRLWRLHKVSAMFARHDPKSTWLGLVPDAANQSLLGRYVTSVYWSIVTLSSVGYGDLHPIELKDITDIEGLQQQEIIDSLPKAIQSSISHYLFYSLVDKVMEMKAEYFPPKEDVILQNEAPTDFYILVTGAVVVGEAKTGDVVGEIGVLCYRPQPFTVRTKRLCQLLRLNRTTFLNLAHSNVGDGTIITNNFLQHLNESKDPMMEGILAETEAMVARGKMDLPVSLLFAASRGDDILLHQLLKKGSDPNETDKNNGKTALHIAASIGNEHCVVLLLEYGANPNIQDLNGSVPLWEAMVGRYESIMKLLKDNGTDISSADVGHFACIAVEKNDIKLLKDIVQYGGDVTQSTRNGTTALHAAVCEGNVEIVKFLLDQGANIDKQDDNGWTPRAFADHQCHEEIQNIFQGLGRNKKSSVIPPIPKNEASFVGKCQSEPFMPGIPQGSMPPNQKLTWFDNHQRRRASPFHNSFFGMMSAANHDYLPSQSDCSTMTSVNELSARVTLSCPEKGEHAKKLVFLPKSLQELLHLGAKKFDFSPTKILTKEGAEVDDINVIRDGDYLILARD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi19g00066 743 SUPERFAMILY Ankyrin repeat 404 588 IPR036770 -
Sebi19g00066 743 Gene3D - 402 586 IPR036770 -
Sebi19g00066 743 ProSiteProfiles Ankyrin repeat region circular profile. 531 563 - -
Sebi19g00066 743 CDD CAP_ED 265 360 IPR000595 -
Sebi19g00066 743 ProSiteProfiles cAMP/cGMP binding motif profile. 263 374 IPR000595 -
Sebi19g00066 743 Gene3D Jelly Rolls 277 382 IPR014710 -
Sebi19g00066 743 ProSiteProfiles Ankyrin repeat region circular profile. 434 465 - -
Sebi19g00066 743 Gene3D - 209 276 - -
Sebi19g00066 743 SUPERFAMILY cAMP-binding domain-like 247 375 IPR018490 -
Sebi19g00066 743 Pfam Ion transport protein 72 199 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi19g00066 743 ProSiteProfiles Ankyrin repeat profile. 531 563 IPR002110 GO:0005515
Sebi19g00066 743 Gene3D - 74 208 - -
Sebi19g00066 743 SMART cnmp_10 266 372 IPR000595 -
Sebi19g00066 743 ProSiteProfiles KHA domain profile. 678 743 IPR021789 -
Sebi19g00066 743 PRINTS Ankyrin repeat signature 547 561 IPR002110 GO:0005515
Sebi19g00066 743 PRINTS Ankyrin repeat signature 435 450 IPR002110 GO:0005515
Sebi19g00066 743 PANTHER POTASSIUM CHANNEL AKT1 195 240 IPR045319 GO:0005249|GO:0006813
Sebi19g00066 743 Pfam Cyclic nucleotide-binding domain 286 359 IPR000595 -
Sebi19g00066 743 SMART ANK_2a 400 429 IPR002110 GO:0005515
Sebi19g00066 743 SMART ANK_2a 498 527 IPR002110 GO:0005515
Sebi19g00066 743 SMART ANK_2a 531 560 IPR002110 GO:0005515
Sebi19g00066 743 SMART ANK_2a 467 496 IPR002110 GO:0005515
Sebi19g00066 743 SMART ANK_2a 434 463 IPR002110 GO:0005515
Sebi19g00066 743 SMART ANK_2a 699 728 IPR002110 GO:0005515
Sebi19g00066 743 Pfam Ion channel 216 239 IPR013099 -
Sebi19g00066 743 SUPERFAMILY Voltage-gated potassium channels 66 239 - -
Sebi19g00066 743 FunFam Potassium channel KAT2 267 379 - -
Sebi19g00066 743 Pfam Ankyrin repeats (3 copies) 405 497 IPR002110 GO:0005515
Sebi19g00066 743 Pfam Ankyrin repeats (3 copies) 505 577 IPR002110 GO:0005515
Sebi19g00066 743 Pfam KHA, dimerisation domain of potassium ion channel 678 740 IPR021789 -
Sebi19g00066 743 ProSiteProfiles Ankyrin repeat profile. 434 466 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi19g00066 Sebi-Chr19 3055264 3061165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi19g00066 239 742 Ion Channels AT4G32500 57.728 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi19g00066 K21867 - gmx:100808832 724.546