Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi19g00038 ATGGAAGAAGAAGCAAACCTATCATCCAGGTTGTTCACTGGAAGAGTTGGTGAAAAAAAAGCAAGTAGTAGTGGAAGGAAAGGCATGGTTCTTCCTTTTCAACCTCTATCTCTCACCTTTGATGAGATCAGATATTCTGTAGACATGCCACAGGAAATGAAAAGTCAAGGAATTTCTGAGGATCGTCTTGAACTTTTGAAGGGTGTTAGTGGTGCTTTTAGGCCTGGAGTACTAACAGCACTGATGGGTGTAAGTGGTGCTGGCAAGACTACTCTACTAGATGTTTTATCTGGAAGGAAAACTAGTGGATATATTGAAGGAAGCATCGCAATATCTGGCTACCCAAAGAATCAACAAACATTTGCTCGCATATCAGGATATTGTGAACAATTTGATATCCACTCACCCAATGTTACAGTTTATGAATCTTTGCTATATTCTGCATGGCTTCGATTAACCCCAGAAGTTGATAAAGCAACTAGAAAGAATGCACTTGTTGGATTGCCAGGCGAGACTGGACTTTCAACTGAGCAGCGCAAGAGACTTACAATTGCAGTTGAACTTGTAGCCAACCCATCAATAATATTCATGGATGAACCAACCACTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACCGTGAGGAACACTGTGGACACAGGACGTACTGTGGTTTGCACTATCCACCAACCAAGTATTGATATATTTGATGCCTTTGATGAGCTGCTACTTCTGAAATTGGGAGGGGAACAAATATATGCTGGTCCAATAGGCAACCACTCTTCCCATCTGATTCAGTACTTTGAGTCTATTCAAGGAGTTCCTAAAATCAGAGATGGTCATAATCCTGCAACCTGGATGTTGGAAGTTACATCACCAGGAAAAGAGGCAAATCTTAAGGTTGACTTCACTGATGTGTACAAAAACTCAGAACTACACCGGAGAAACAAAGAATTGATCCAGGAGCTTAGTGTTCCTTCTCAAGGTTCAAAAGATCTGCACTTTGATAGTCAGTATTCACAAACTTTCGTGGCACAATGTATAGCTTGTCTATGGAAACAGCATTTGTCATATTGGCGGAACACATCATATACTGCAGTTAGACTCCTATTCACAACAATGACAGGTTTATTGTTTGGGTTGGTTTTTTGGGACGTTGGCTTGAAAAGTCACAGGAAAAAGGAGCAAGATCTTTTCAATGCAATGGGTTCAATGTATGCTGCTGTTACCTTCATTGGGGTGGTAAATGGTGCCTCAGTGCAGCCTATAGTAGCAATCGAAAGAACAGTCTTCTATAGAGAGAGAGCTGCAGGAATGTATTCAGCTTTGCCATATGCTCTTGCACAGGTTATTATAGAGCTTCCCCATATCTTGGCTCAGGCTCTTATATATGGGATCATAGTATATGCCATGATGGGATTTGAATGGACAGTATCAAAGCTGGCATATTGTCCACCTCATTCTATGCAATATGGTGCCTTTTCTCAGGCTTCATCATTCCCTTATCGAGAATACCTATATGGTGGAAGTGGTACTATTGGATTTGCCCTGTTGCTTGGACCTTGTATGGATTGGTGGCTTCCCAATATGGAGACGACATGGACAAACTTGAAAATGGTCAAAGGGTTGAAGAATTTGTGA 1647 0.4147 MEEEANLSSRLFTGRVGEKKASSSGRKGMVLPFQPLSLTFDEIRYSVDMPQEMKSQGISEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLLDVLSGRKTSGYIEGSIAISGYPKNQQTFARISGYCEQFDIHSPNVTVYESLLYSAWLRLTPEVDKATRKNALVGLPGETGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYAGPIGNHSSHLIQYFESIQGVPKIRDGHNPATWMLEVTSPGKEANLKVDFTDVYKNSELHRRNKELIQELSVPSQGSKDLHFDSQYSQTFVAQCIACLWKQHLSYWRNTSYTAVRLLFTTMTGLLFGLVFWDVGLKSHRKKEQDLFNAMGSMYAAVTFIGVVNGASVQPIVAIERTVFYRERAAGMYSALPYALAQVIIELPHILAQALIYGIIVYAMMGFEWTVSKLAYCPPHSMQYGAFSQASSFPYREYLYGGSGTIGFALLLGPCMDWWLPNMETTWTNLKMVKGLKNL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi19g00038 548 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 274 IPR003439 GO:0005524
Sebi19g00038 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 257 IPR027417 -
Sebi19g00038 548 SMART AAA_5 75 251 IPR003593 GO:0016887
Sebi19g00038 548 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 18 485 - -
Sebi19g00038 548 CDD ABCG_PDR_domain2 35 257 IPR034003 -
Sebi19g00038 548 Pfam ABC transporter 66 201 IPR003439 GO:0005524
Sebi19g00038 548 Pfam ABC-2 type transporter 348 496 IPR013525 GO:0016020|GO:0140359
Sebi19g00038 548 FunFam ABC transporter G family member 40 52 266 - -
Sebi19g00038 548 Gene3D - 52 270 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi19g00038 Sebi-Chr19 2384840 2387998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi19g00038 59 234 Calmodulin-binding Proteins AT2G36910 25.641 7.03e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi19g00038 K08711 - gmx:100800368 829.706