Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi19g00014 ATGGCAACTATGTATGATTTTGGAAGTAAAATATTGCTTCTTAACAGATTGCCAGTGCCAATAGAAGTAGCTGATTTTGCCGCATGTGGTGCCAAGTCCAAACACAGTCCCTGGTTGTTGATGGAGCGGCCCGGGAGCTTCAGCGGCAGTCAGCATATTATAGAAATAGCCGGGAGCCCAGATGCTTCTACGTCCACCCCACCCCGTGATAGACATATTAATGGTATAGATGCGTCACAGCATGAAGAAAGAATAAATATTGTGCGGTTGTCTGTCAGTCAGCCTTCAGTTTCAACCTCTGGTGTATCTAATGGATTGAATAGTAGGAATTCTTCATTCATAAGACGTGGGGACTCTCGTCGGAATAGAAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAGCTAGTCCTCTTAGTTGGCCAGATTGTTGCATCTATCGCTGTTTTGTCATTGTCAAGGCATGAGCATCCGCGTACCCCGTTGTTTCAATGGATAGTGGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTTCTTTATTGGCGATATTATCACCATAACCATATGCGAGAGCAAGATTCTTCTCAATCACGTCAAACATCTCCACGGATTAATGATCCTTCAGGGATACTTCTTTCCAGTTCCAGAACTAACGGGGGAGACAATGGTCAGGCTGCTGCTTCCTCCAGAAGCAATCAAGATTCAGTATTGATGAGCAGAAGAATGAAGACACTCGTGGAATACTTCAAAATAACCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGAGGACATTCATCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTATTTCTTGCATTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTCTGCTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAAAACAGAGGGGCAACTTCCGAATCCATTAATGCTCTGCCAACTTACAAGTTTAAATTGAAGAAAAATAAACGAAATGGTGAAAGCAACTCAGCTGCTGCTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATCTCTGGAGAAGATGCAGCCTGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGCTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTCGGTGAAAATATGGTCACCGGAGAAGCTGCCAGCCAAATACGGGGCGAGAGCAGGGTTGAGAATAGCCTCCCCAATACCTCAGTTTAA 1362 0.4376 MATMYDFGSKILLLNRLPVPIEVADFAACGAKSKHSPWLLMERPGSFSGSQHIIEIAGSPDASTSTPPRDRHINGIDASQHEERINIVRLSVSQPSVSTSGVSNGLNSRNSSFIRRGDSRRNRSPVHSGLWISIELVLLVGQIVASIAVLSLSRHEHPRTPLFQWIVGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRINDPSGILLSSSRTNGGDNGQAAASSRSNQDSVLMSRRMKTLVEYFKITLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPTYKFKLKKNKRNGESNSAAAEGGIVAAGTEKERVISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENMVTGEAASQIRGESRVENSLPNTSV 453
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi19g00014 453 SMART ring_2 381 421 IPR001841 -
Sebi19g00014 453 MobiDBLite consensus disorder prediction 99 125 - -
Sebi19g00014 453 MobiDBLite consensus disorder prediction 99 113 - -
Sebi19g00014 453 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 41 425 - -
Sebi19g00014 453 SUPERFAMILY RING/U-box 373 428 - -
Sebi19g00014 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 430 IPR013083 -
Sebi19g00014 453 FunFam E3 ubiquitin-protein ligase 364 431 - -
Sebi19g00014 453 Pfam Ring finger domain 380 422 IPR001841 -
Sebi19g00014 453 ProSiteProfiles Zinc finger RING-type profile. 381 422 IPR001841 -
Sebi19g00014 453 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi19g00014 Sebi-Chr19 629614 636907 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi19g00014 115 428 C3H Transcription Factor Family AT1G80400 59.062 8.62e-140 405
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi19g00014 - - gmx:100778728 706.057