Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi199g00118 ATGGGGAGACAACACAACGATAAAATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAACTGAAGAGCGACTCAGAGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACGGGAAGAGCTCGTGGATTTGGTTTTGTTGTTTTTTCAGACCCAGCTGTTGCAGAAATAGTCATCAAAGAAAAGCACAGCATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCGAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTCTTGCTCAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCACCAGGACCTAGCCGTACCCCACTTGGTGGATTCAACTATGGTCTGAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAATGCTGTTGGAGGCTATGGACTTCGGGTGGATGGTAGATTCAGTCCAGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTTTGAACCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAACAATCTTAGCTATGGTCGGGGATTAAATCCTTACTTTATTGGCAACTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAATGGCAATGGAGGAAACAATTCTTTCTTCAGTAATGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAGTGCATACATTGGATCAGGAAGCAGGAGTGTTGGTGGAAACACATTTGGCAATACCGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGACATGGGGGAGGGAACAATGTGTCACAGAATAGTGGCAACCTTGGATATGGAGGTGGCGACAACACTTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCAGTGGTACCACTCTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCTGATTTTTACAATAATAATTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCAGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAAAGGCAGCCAAATAGGGCAAAGATTTCATGGAGTAAGATCTTGCTTAAGTGA 1485 0.4364 MGRQHNDKMQSDNGKLFIGGISWDTTEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHSIDGRMVEAKKAVPRDDQNILSRNSGSSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGFNYGLSRVNSFLNGFTQGYTPNAVGGYGLRVDGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNNNLSYGRGLNPYFIGNSNRFGSPVGYDNGNGGNNSFFSNVTRNLWGNGGLSYGTSSANSSAYIGSGSRSVGGNTFGNTGVNWGSSAISGHGGGNNVSQNSGNLGYGGGDNTYGLGTGGYGRSSGTTLAPTSSYSASNGGVDGAFADFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRAKISWSKILLK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi199g00118 494 Gene3D - 12 96 IPR012677 -
Sebi199g00118 494 CDD RRM1_hnRNPA_hnRNPD_like 16 86 - -
Sebi199g00118 494 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 9 483 - -
Sebi199g00118 494 CDD RRM2_Hrp1p 116 193 - -
Sebi199g00118 494 MobiDBLite consensus disorder prediction 94 108 - -
Sebi199g00118 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Sebi199g00118 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 76 IPR000504 GO:0003723
Sebi199g00118 494 FunFam Heterogeneous nuclear ribonucleoprotein 1 13 95 - -
Sebi199g00118 494 SUPERFAMILY RNA-binding domain, RBD 114 202 IPR035979 GO:0003676
Sebi199g00118 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Sebi199g00118 494 SMART rrm1_1 116 188 IPR000504 GO:0003723
Sebi199g00118 494 SMART rrm1_1 15 86 IPR000504 GO:0003723
Sebi199g00118 494 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
Sebi199g00118 494 Gene3D - 112 198 IPR012677 -
Sebi199g00118 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Sebi199g00118 494 SUPERFAMILY RNA-binding domain, RBD 7 113 IPR035979 GO:0003676
Sebi199g00118 494 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi199g00118 Sebi-Chr199 1390717 1394874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi199g00118 3 76 Eukaryotic Initiation Factors Gene Family AT2G36660 32.432 1.22e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi199g00118 K14411 - gmx:100795907 822.002