Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi199g00111 ATGCTCAACAAAAGCGGATGCAACATTTTTGTGCAGGGTCCTTCAAAGGGTGCTGGAAGAGAAGAGAAGAAATGCTTGCCAATATGTGTGATGAGCGAGCCCGTATGTTGGCAAGATCAATTTAATGTGAGCATGAACCATGTTCATGCTTTGGCTATTCTTGTGTCTACCTTTCACCACGGTAAACATCCTTCTGCAATTGACCAGGAGGATCGTGAGATATTTGCGAGCAAGGGCATCTGGAAAGGGGATGCTACACCAGAACAGCGTTTTGAAGCCACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTAGTTGACAAGCTTCTTCACCAACTTTCCAGCAAGCAAACCATTGTTGTCAATGTTTATGACATAACTAATGCATCTGCACCTATCACAATGTATGGTACTGATGTTGCTGACACTGGCCTGCTACACATAAGCAGTCTAGATTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGATTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCTGTGGGCAATAAATCGAATAGAAAAAGTGGAGGATGATTATAGTCAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACATGAGATCAGGACTCCAATGAATGGGGTGTTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGAGAACCAGATGGATTGTGCTCAAACTGCCCACAAGAGTGGTAAAGATCTTATATCAGTCATAAATGAGGTTCTTGATCAGGCCAAGATTGAGGCAGGCAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCACATGCTATTCTAGATGAAATTCTATCACTTTTCTCTGAAAAATCTAATGAAAAAGGACTTGAGTTGGCTGTTTATGCATCCAATCAAGTGCCTGAAGTTGTCATTGGCGATCCTAAACGGTTCCGGCAAATAATTACCAATCTTGTTGGCAATTCACTTAAGTTCACTCATGATAAAGGACATGTTTTTATCTCGGTTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGATGCAGTGCTGAGAGAAGGCTTGAACTTGGATCAGGACATGTCAGACAGAACATATAATACATTAAGTGGGTTTCCTGTTGGCAACAGATGGAAAAGCTGGGCAAATTTTAAGAAGTTAGATAGCACAAATTTGACGGATAAGCCTGAAATCATTCAACTACTAGTAACAGTTGAGGACACGGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGATAGTTCCCCATCCCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTCGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCATTTACCGGAAATTTCAGAAAAGGAAGAAACCACATCTCTGGATGCAAGTGGCAGAAGTGCAATCTTTTTGTCCCAGAGTTCCAAGGATTGAGAGCATTAGTTATAGATAGAAGAAAAATCCGAGCTGTGGTCACAAGATATCATCTGCAGAGGTTGGGGATGTCCGTGGATGTAACTTCCAGTCTCAAATCTGCATGCTCTTGTCTATCTGATACCTGCAATATGAGTATGTCAACGCAGTTTGCCATGATTCTTATAGACAAGGATTCTTGGGACAAGGAAAGTAGTATCTTATACACAATCAAGAAACACAGACAGAATGGCATCAAAGGGGACCCAATAAGCTTCCAAAGATTTTTTCTCCTGGCCTCTCAATTTAGCCCCAGAGAACGTGATGAACTCAAGTCAGCTGTGAACAGAAGGGTTGCCAAAGGTGTTCTGCAGAAATATGGGGCAATAGTTACCTGTGTGGAGGGTGGCAGGGCTGCTCTAAAAATGCTTAAGCCACCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCGACAAGGCAAATCCGCTGTATGGAAAGTGGTTTAAATGAGAAAATTGCATGTGGGCAAGCATCAGCGGAGATGTTTGGCAACATCTCTTATTGGCACATTCCAATACTAGCAATGACAGCTGATGTAACTCAGGCTTCAAGTGAAGAATGCAGAAAGTGTGGGATGGATGGCTATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTTTATGGCAGTGGCAGATTTCTTCAGTTCTGGTTCCTAG 2277 0.426 MLNKSGCNIFVQGPSKGAGREEKKCLPICVMSEPVCWQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQEDREIFASKGIWKGDATPEQRFEATVGYLGASYDVPSLVDKLLHQLSSKQTIVVNVYDITNASAPITMYGTDVADTGLLHISSLDLGIRYENMRCTADSSRGLHYLGQQSMHLWAINRIEKVEDDYSQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDENQMDCAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVAFDPHAILDEILSLFSEKSNEKGLELAVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFISVHLANEVKNPLHIMDAVLREGLNLDQDMSDRTYNTLSGFPVGNRWKSWANFKKLDSTNLTDKPEIIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGNFRKGRNHISGCKWQKCNLFVPEFQGLRALVIDRRKIRAVVTRYHLQRLGMSVDVTSSLKSACSCLSDTCNMSMSTQFAMILIDKDSWDKESSILYTIKKHRQNGIKGDPISFQRFFLLASQFSPRERDELKSAVNRRVAKGVLQKYGAIVTCVEGGRAALKMLKPPHNFDACFMDLQMPEMDGFEATRQIRCMESGLNEKIACGQASAEMFGNISYWHIPILAMTADVTQASSEECRKCGMDGYVSKPFEEEQLFMAVADFFSSGS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi199g00111 758 Gene3D - 35 66 - -
Sebi199g00111 758 SMART HisKA_10 211 276 IPR003661 GO:0000155|GO:0007165
Sebi199g00111 758 PANTHER TWO-COMPONENT HISTIDINE KINASE 87 746 - -
Sebi199g00111 758 ProSiteProfiles Histidine kinase domain profile. 218 495 IPR005467 -
Sebi199g00111 758 Gene3D - 275 495 IPR036890 -
Sebi199g00111 758 ProSiteProfiles CHASE domain profile. 85 140 IPR006189 -
Sebi199g00111 758 SMART HKATPase_4 323 495 IPR003594 -
Sebi199g00111 758 CDD REC_hyHK_CKI1_RcsC-like 625 750 - -
Sebi199g00111 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 265 490 IPR036890 -
Sebi199g00111 758 FunFam Ethylene receptor 1 276 493 - -
Sebi199g00111 758 Pfam His Kinase A (phospho-acceptor) domain 211 276 IPR003661 GO:0000155|GO:0007165
Sebi199g00111 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 198 277 IPR036097 GO:0000155|GO:0007165
Sebi199g00111 758 CDD HisKA 211 272 IPR003661 GO:0000155|GO:0007165
Sebi199g00111 758 SMART REC_2 623 750 IPR001789 GO:0000160
Sebi199g00111 758 SUPERFAMILY CheY-like 624 753 IPR011006 -
Sebi199g00111 758 ProSiteProfiles Response regulatory domain profile. 617 754 IPR001789 GO:0000160
Sebi199g00111 758 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 490 IPR003594 -
Sebi199g00111 758 CDD HATPase_EvgS-ArcB-TorS-like 328 490 - -
Sebi199g00111 758 FunFam Histidine kinase 4 183 274 - -
Sebi199g00111 758 Pfam Response regulator receiver domain 626 750 IPR001789 GO:0000160
Sebi199g00111 758 Gene3D - 623 756 - -
Sebi199g00111 758 Coils Coil 188 208 - -
Sebi199g00111 758 Gene3D - 181 274 - -
Sebi199g00111 758 PRINTS Bacterial sensor protein C-terminal signature 455 473 IPR004358 GO:0016310|GO:0016772
Sebi199g00111 758 PRINTS Bacterial sensor protein C-terminal signature 420 434 IPR004358 GO:0016310|GO:0016772
Sebi199g00111 758 PRINTS Bacterial sensor protein C-terminal signature 479 492 IPR004358 GO:0016310|GO:0016772
Sebi199g00111 758 PRINTS Bacterial sensor protein C-terminal signature 438 448 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi199g00111 Sebi-Chr199 1323525 1330645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi199g00111 38 78 Miscellaneous Gene Families AT5G35750 73.171 6.44e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi199g00111 HATPase_c 4.4e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi199g00111 K14489 - gmx:100805107 1046.96