Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi199g00109 ATGTATGCAACTTCTGCCATTTTCATTCCTGTGAATGCAATTTCTCCAACTATGGAGAATTGGGTTATCGATGTCCACCTAATAAGGATATGGACCATTCCTTACTGCTATGATCCTACACGCATCCTATCTGTTGAAATGGTCTTTATGGACCGAATGGGTGATAAGATTCAAGCTTCAGTTAGCAGGGACCTACTGAAGCTGAAAAAGCTGGAAATGGATGAAGGTGGCTATTACTATATTAGCAATGTTGTTGTTGTGCCAAATGATGGGAATGATAGACCAACGAGGCATGCATTCAGGATGGTCTTTGACAGGAGGACAAAGGTGGTCCCTGGTGAATGTCTTTTTTATACCAAGTTTGGCCTGTCTCCAGTTACTTGCAGTGACATTTTAAGGAATAAAAAGGACACACAACATCTTGTGGATAAGGTTGGGTTGCTAACTGTTGTGTCTTGCGAAAGGGAGTACACAAAGGATGATAGAAATGTGCTTGCGGTTTACTTGGAAATCACTGATCCCACGGGAAAGGTAGAGTGTGTTGTCTATGATGATATTGTGGAGGATCTTGTGGAATTCCTTCGAAAGCAAGGACCATGCACTCCTGTTATTGTGGTCCAATTTACCAGAATAGTCCCGGATGCACAAGTGCTTTTTGGTGATATTGGAATTGAGACAGTTCAACATATCTCCAGGATTCTGTTTAACCCAAATTTACCGGATGTGTTTGATATGCGAGAGTGGCTGGTATTGAGTGGGATATCTACTGAAGGTAAAATTCAGTATAGGAACATGGACATGTCATGTGTTATCCTAAGGGATGAATTCCTTTATTTTTACCACAAGAAAGACATAGGTCAATTAAACAAACAAGGGAAGGGAGGTTGCTTTGTAATTTGTGCAACCATCACTGGGTTTGCTGAAAATGAGGCCTGGTGGTACTCTGCATGTAGGCCCCATGCTTGCAGCTCTATGGGGAGCTCAATCTACACTTGTGATGGCAATTTTTCTGTTATCCCCAGGTATTCTCTAAAAATAGAGGTATCAGATGGGGCAGAATCAACTTACCTGCAGTTAGGTGATGAGGATGTGGAGGTGTTAGTGAATGTTAAATGTTCAGAACTGATTTCTAACTTGCAGCCTGCTCAATCCATAACATACCCAGAAGTGTTCAATTGCTTGCTTCGTAAGCGAATGTTGTTTGTGGTTGAAACAAAAAGCTTCTGTGATGTGGACGAGGGATGTATCAAAGTGTTGAGGGCATGTGCTTATAAAGAACTGCCAATATCAAGGATTGCAGGACTGTTAGGGGAGCGAGGCATGACTAGAAAACAAAACTTTGATGAGGGAAGCTCTTATGCAAGTGCCTTACCTGGAGATAATTTCACCCCTAAAGGGTCTGCCACCTTTAATTGTTCCTCTGCGGCAAGTGCTTCAGTCAATAATTTGACCAACCTAATTACCCCAGATCCTCAGACTGAACCTTCTGTTGATAAGCACTGTGTTCACTTCACAACAAGAACTAATTAG 1530 0.4196 MYATSAIFIPVNAISPTMENWVIDVHLIRIWTIPYCYDPTRILSVEMVFMDRMGDKIQASVSRDLLKLKKLEMDEGGYYYISNVVVVPNDGNDRPTRHAFRMVFDRRTKVVPGECLFYTKFGLSPVTCSDILRNKKDTQHLVDKVGLLTVVSCEREYTKDDRNVLAVYLEITDPTGKVECVVYDDIVEDLVEFLRKQGPCTPVIVVQFTRIVPDAQVLFGDIGIETVQHISRILFNPNLPDVFDMREWLVLSGISTEGKIQYRNMDMSCVILRDEFLYFYHKKDIGQLNKQGKGGCFVICATITGFAENEAWWYSACRPHACSSMGSSIYTCDGNFSVIPRYSLKIEVSDGAESTYLQLGDEDVEVLVNVKCSELISNLQPAQSITYPEVFNCLLRKRMLFVVETKSFCDVDEGCIKVLRACAYKELPISRIAGLLGERGMTRKQNFDEGSSYASALPGDNFTPKGSATFNCSSAASASVNNLTNLITPDPQTEPSVDKHCVHFTTRTN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi199g00109 509 SUPERFAMILY Nucleic acid-binding proteins 288 406 IPR012340 -
Sebi199g00109 509 Gene3D - 279 421 IPR012340 -
Sebi199g00109 509 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Sebi199g00109 509 Pfam Domain of unknown function DUF223 46 112 IPR003871 -
Sebi199g00109 509 SUPERFAMILY Nucleic acid-binding proteins 126 253 IPR012340 -
Sebi199g00109 509 Gene3D - 7 112 IPR012340 -
Sebi199g00109 509 Gene3D - 120 255 IPR012340 -
Sebi199g00109 509 CDD RPA1_DBD_A_like 25 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi199g00109 Sebi-Chr199 1293570 1296299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi199g00109 10 375 Core DNA Replication Machinery Family AT5G08020 20.672 3.86e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi199g00109 - - tpra:123904946 224.557