Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi199g00084 ATGCAATCCAAATCTGAAACTGCAAATCAACTGGGGTCTAATCCACATTCCTTTACGCCTGGCAGTGTTTATTCTGAACCCTGGTGGCGTGGTGTTGGGTACAATCCTGTCTCCCAAGCAATGTCAGGGGCAAATGGATCCAATTCATCATCGCTTGAATGCCCTAATGGTGATTCAGAATCAAGTGAAGGCCAATCTTTGTCCAATAATGGGCTGAATGAAGAAGATGATGATGCTAATAAAGAATCACAACCTGCTGCTCCTAATCAATCAGGGAATTACGGACAAGAACACCAAGGGATGCAACATGGTTCATCATCTGCACCTTCTGTGCGTGATGGATGTCTTGCGCAGGCTCCACAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTTCAAATCCTTATCAGGATCCATACTATGGGGGCATGATGGCAGCATATGCACACCAGCAGTTGGGATATGCTCCTATAGGAGCGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGTTGATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCAAGGGGAAGTGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGAGCAAGGAAAGGGATATGGGTAGTGGTTCAGTTCCATCAGCACAGTCAATTAGTTCATCTGGTTCTGAAGCTTTACCCTCTGACTCTGCTGAGACCCGGAATTCTCCAAGTGTGCAACCAAATGCAAGAGGATCTAAAGTGAATGAGAGATTTCAAGAACTCAACTATGCAAGTGGTAGTAACTCCTACCATAATCATAATGGTTTACAAATGGCTTCAACATTTTGTTTGCACTCAGGTGAAAGAGTAGAAGAAGGGGACTGTTCAGGTCAGCAACGGGGGAGCATCTCATCTGAGCACACAACACAGAGGCGTCTTGCTATTCAGTAA 1038 0.4509 MQSKSETANQLGSNPHSFTPGSVYSEPWWRGVGYNPVSQAMSGANGSNSSSLECPNGDSESSEGQSLSNNGLNEEDDDANKESQPAAPNQSGNYGQEHQGMQHGSSSAPSVRDGCLAQAPQLELVGHSIACASNPYQDPYYGGMMAAYAHQQLGYAPIGAPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTEVESKERDMGSGSVPSAQSISSSGSEALPSDSAETRNSPSVQPNARGSKVNERFQELNYASGSNSYHNHNGLQMASTFCLHSGERVEEGDCSGQQRGSISSEHTTQRRLAIQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi199g00084 345 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Sebi199g00084 345 MobiDBLite consensus disorder prediction 83 112 - -
Sebi199g00084 345 MobiDBLite consensus disorder prediction 211 226 - -
Sebi199g00084 345 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Sebi199g00084 345 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 288 IPR001289 GO:0003700|GO:0006355
Sebi199g00084 345 MobiDBLite consensus disorder prediction 318 345 - -
Sebi199g00084 345 MobiDBLite consensus disorder prediction 1 21 - -
Sebi199g00084 345 Gene3D - 172 234 - -
Sebi199g00084 345 MobiDBLite consensus disorder prediction 211 283 - -
Sebi199g00084 345 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Sebi199g00084 345 MobiDBLite consensus disorder prediction 1 112 - -
Sebi199g00084 345 MobiDBLite consensus disorder prediction 244 283 - -
Sebi199g00084 345 MobiDBLite consensus disorder prediction 326 345 - -
Sebi199g00084 345 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Sebi199g00084 345 MobiDBLite consensus disorder prediction 38 73 - -
Sebi199g00084 345 MobiDBLite consensus disorder prediction 227 241 - -
Sebi199g00084 345 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Sebi199g00084 345 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi199g00084 Sebi-Chr199 981305 983465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi199g00084 1 271 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.475 4.44e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi199g00084 CBFB_NFYA 1.6e-26 No_clan