LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi199g00084	ATGCAATCCAAATCTGAAACTGCAAATCAACTGGGGTCTAATCCACATTCCTTTACGCCTGGCAGTGTTTATTCTGAACCCTGGTGGCGTGGTGTTGGGTACAATCCTGTCTCCCAAGCAATGTCAGGGGCAAATGGATCCAATTCATCATCGCTTGAATGCCCTAATGGTGATTCAGAATCAAGTGAAGGCCAATCTTTGTCCAATAATGGGCTGAATGAAGAAGATGATGATGCTAATAAAGAATCACAACCTGCTGCTCCTAATCAATCAGGGAATTACGGACAAGAACACCAAGGGATGCAACATGGTTCATCATCTGCACCTTCTGTGCGTGATGGATGTCTTGCGCAGGCTCCACAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTTCAAATCCTTATCAGGATCCATACTATGGGGGCATGATGGCAGCATATGCACACCAGCAGTTGGGATATGCTCCTATAGGAGCGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGTTGATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCAAGGGGAAGTGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGAGCAAGGAAAGGGATATGGGTAGTGGTTCAGTTCCATCAGCACAGTCAATTAGTTCATCTGGTTCTGAAGCTTTACCCTCTGACTCTGCTGAGACCCGGAATTCTCCAAGTGTGCAACCAAATGCAAGAGGATCTAAAGTGAATGAGAGATTTCAAGAACTCAACTATGCAAGTGGTAGTAACTCCTACCATAATCATAATGGTTTACAAATGGCTTCAACATTTTGTTTGCACTCAGGTGAAAGAGTAGAAGAAGGGGACTGTTCAGGTCAGCAACGGGGGAGCATCTCATCTGAGCACACAACACAGAGGCGTCTTGCTATTCAGTAA	1038	0.4509	MQSKSETANQLGSNPHSFTPGSVYSEPWWRGVGYNPVSQAMSGANGSNSSSLECPNGDSESSEGQSLSNNGLNEEDDDANKESQPAAPNQSGNYGQEHQGMQHGSSSAPSVRDGCLAQAPQLELVGHSIACASNPYQDPYYGGMMAAYAHQQLGYAPIGAPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTEVESKERDMGSGSVPSAQSISSSGSEALPSDSAETRNSPSVQPNARGSKVNERFQELNYASGSNSYHNHNGLQMASTFCLHSGERVEEGDCSGQQRGSISSEHTTQRRLAIQ	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi199g00084	345	ProSitePatterns	NF-YA/HAP2 subunit signature.	177	197	IPR018362	GO:0003677\|GO:0016602
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	83	112	-	-
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	211	226	-	-
	Sebi199g00084	345	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	174	229	IPR001289	GO:0003700\|GO:0006355
	Sebi199g00084	345	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	15	288	IPR001289	GO:0003700\|GO:0006355
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	318	345	-	-
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	1	21	-	-
	Sebi199g00084	345	Gene3D	-	172	234	-	-
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	211	283	-	-
	Sebi199g00084	345	ProSiteProfiles	NF-YA/HAP2 family profile.	172	232	IPR001289	GO:0003700\|GO:0006355
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	1	112	-	-
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	244	283	-	-
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	326	345	-	-
	Sebi199g00084	345	SMART	cbf3	171	232	IPR001289	GO:0003700\|GO:0006355
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	38	73	-	-
	Sebi199g00084	345	MobiDBLite	consensus disorder prediction	227	241	-	-
	Sebi199g00084	345	PRINTS	CCAAT-binding transcription factor subunit B signature	206	229	IPR001289	GO:0003700\|GO:0006355
	Sebi199g00084	345	PRINTS	CCAAT-binding transcription factor subunit B signature	175	197	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi199g00084	Sebi-Chr199	981305	983465	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi199g00084	1	271	CCAAT-HAP2 Transcription Factor Family	AT5G12840	56.475	4.44e-88	264

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Sebi199g00084		CBFB_NFYA	1.6e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi199g00084	K08064		-	gmx:100808378	506.908