Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi199g00049 ATGTTTAACTCAAATAGCATGGTTCCATTTTCTTCAAATTCTGCCGCAGAAGATAGAGTGACTAGTTCTAGAAACAGGCCTCCACGTGCCACCCCACCTCCATTTTTGGTTCGGATGGCCATGAGAATATCTAGAGCAAGGTGGTTTACTTTCTTAAGAAGAGTATTCCATTACCAAAATGGATCAAGGTCCAATCTTGGCACTAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGATAGTTCAGATAACCATAACAACATTCACTTTGGTCATTTCAAAAAGGGAGAGACCTGTTTGGCCTATGAGGATATGGATTGCTGGTTATGATATTGGATGTGTTCTTAATCTTCTGATACTTTATGGGCGCTACCGTCAAATTTATCTGACTCAAGGAGATGCTATCAACCTTTCTGATATGGAACAACAGAGAAACAATGAAGAAACCAGCCTCCTCGGTTACAACATGAACATGGCCTCTTCTCATAGAGGAGCATCTGATGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGCTCATAACAAGTTAGAGCTTGGCAATGACTCTGAAGCCAGTGAAAAGTTGATTAATGAAGATTCTGAATGCTGCATTTGCTTAGCAAAATACAAAGACAAAGAAGAAGTTAGACAATTGCCCTGTTCCCATATTTTCCACCTAAAATGTGTGGATCAGTGGCTAAAAATCATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGGTAG 768 0.3984 MFNSNSMVPFSSNSAAEDRVTSSRNRPPRATPPPFLVRMAMRISRARWFTFLRRVFHYQNGSRSNLGTNPFNSSTWMMLEFIALIVQITITTFTLVISKRERPVWPMRIWIAGYDIGCVLNLLILYGRYRQIYLTQGDAINLSDMEQQRNNEETSLLGYNMNMASSHRGASDDQISQLPSWRHKEAHNKLELGNDSEASEKLINEDSECCICLAKYKDKEEVRQLPCSHIFHLKCVDQWLKIISCCPLCKQGLER 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi199g00049 255 MobiDBLite consensus disorder prediction 1 21 - -
Sebi199g00049 255 SUPERFAMILY RING/U-box 200 253 - -
Sebi199g00049 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 254 IPR013083 -
Sebi199g00049 255 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Sebi199g00049 255 MobiDBLite consensus disorder prediction 1 33 - -
Sebi199g00049 255 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 155 252 - -
Sebi199g00049 255 Pfam Ring finger domain 208 250 IPR001841 -
Sebi199g00049 255 SMART ring_2 209 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi199g00049 Sebi-Chr199 507356 509328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi199g00049 154 184 C3H Transcription Factor Family AT5G55970 77.419 8.37e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi199g00049 - - aip:107609704 415.616